Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09]
2,373 sequences; 148,806,073 total letters
Query= NC_008187.1
Length=191100
Score E
Sequences producing significant alignments: (Bits) Value
seq44 100 3e-16
seq144 96.9 4e-15
>seq44
Length=922537
Score = 100 bits (110), Expect = 3e-16
Identities = 144/198 (73%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 126181 GTGTAAATGTAGCGGGGAGCTGCCGA-ATCCTTGCCTCCCTCCAACCGCGTGCCAAACTG 126239
||||| |||||||| | |||| || ||||||||| |||| || ||| || || |||||
Sbjct 37788 GTGTAGATGTAGCGTGC-GCTGGCGGCATCCTTGCCGCCCTGCAGCCGGGTACCGAACTG 37846
Query 126240 ACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGAC 126299
||| ||| | || || | || |||||| ||||| |||||||| || | || ||
Sbjct 37847 GCCGCTCGGGTGCAGCAGGTTGACGTTGTTGCTGCCCACGAAGTCCTGGGCCAGGTTCAC 37906
Query 126300 AATGGT-CTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358
||| | ||||| || ||||||||||||| | ||| | | |||||||| |||||
Sbjct 37907 AATTGCGCTCGC-CAAACTCTGCTCGCCGTGGTGGTACGCCGAGTGCTCGGCTACGTAAG 37965
Query 126359 CGCTCAGCTGCGCAACCT 126376
|| |||||| || ||||
Sbjct 37966 CGGACAGCTGGGCCACCT 37983
>seq144
Length=117093
Score = 96.9 bits (106), Expect = 4e-15
Identities = 114/152 (75%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 15048 CGCCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCACGTGCGGCATG 15106
|||| || | ||||||||||| ||| | | ||| || |||||||||||||||||
Sbjct 86055 CGCCGTAGGTGGGCGACAAGTTCGCCTCGCGCCACGGC-CAGAAGGGCACGTGCGGCATC 85997
Query 15107 ATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATC 15166
| | | | ||| ||||||||||| || ||| ||||| ||| ||||| ||| ||
Sbjct 85996 ACGTACACGATGGAGGACATGCCCTTCACGGCGGAGGGCATCGTGCCGGACATCATCGTC 85937
Query 15167 AACCCCAACTGCATCCCGTCCCGCATGACCAT 15198
||||| || |||||||||||||||||||||
Sbjct 85936 AACCCGCACGCCATCCCGTCCCGCATGACCAT 85905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611373864584800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |