Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq305 118 2e-21 seq239 109 1e-18 seq30 107 4e-18 seq12 98.7 2e-15 seq24 86.0 1e-11 seq20 84.2 4e-11 >seq305 Length=23945 Score = 118 bits (130), Expect = 2e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||||| || ||||| ||||| ||||| || |||||||||||| || || Sbjct 5637 GGCCCCAACGGTGCCGGCAAGTCGACCCTCATCAAGGTGCTGACTGGCGAGGTTGAGCCC 5578 Query 280239 ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCT 280298 || || | || |||||||| |||||| | || || || ||||| || |||||||| Sbjct 5577 ACCTCCGGCACGGTGTGGAAGCACCCCAACCTCCGTATCGCCTACGTGGCGCAGCACGCC 5518 Query 280299 TTCCACCACATCGAGAACCACCTGGACA 280326 ||||||||| | ||||| |||||||||| Sbjct 5517 TTCCACCACCTGGAGAAGCACCTGGACA 5490 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || |||||||||||||| | || | | || || |||||| Sbjct 4107 ATCCGCGGTCTGTCGGGCGGCCAGAAGGTCAAGGTCGTGCTGGCTGCTGCCACGTGGCAG 4048 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 |||| ||| | ||||| || |||||||| |||||||| |||||||| || || ||| Sbjct 4047 AACCCCCACCTTATCGTGCTGGACGAGCCCACCAACTACCTGGACCGTGACTCGCTCGGC 3988 Query 280833 GCTCTG---AGTGCTGCTCTGGACACATTTGGCGGCGGCGTCGTAGTCATTTCTCACAGC 280889 |||||| | || | |||| || ||||||||| | || | || |||||| | Sbjct 3987 GCTCTGGCCGGCGCCATTAAGGAC---TTCGGCGGCGGCATTGTCATTATCTCTCACCAC 3931 Query 280890 ACAGAATTTGTCAAGTCTGTGTGCTCCGAGATGTGGACAGTGGGGGGAGGCAAG 280943 | || || |||| | ||||| ||| ||||| || || || |||||| Sbjct 3930 AACGAGTTCGTCAGCGCGCTGTGCAATGAGCGGTGGATTGTCGGCGGCGGCAAG 3877 >seq239 Length=30718 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 114 AGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 173 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 174 CCCCACATTGGGC 186 >seq30 Length=1267136 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 80432 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 80373 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 80372 CCCACATTGGGC 80361 >seq12 Length=2772333 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 || ||||| |||||||| || ||| ||| ||||| || || || ||||||||| Sbjct 1550264 GGCCTGGAGGCCGAGTTTGGCACGCACAGCGCCATCCGCGGCCTGTCGGGCGGCCAGAAG 1550205 Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799 ||||| || || | | || || |||||||| ||||||| || | || || |||||| Sbjct 1550204 GTCAAGCTGGTGCTTGCGGCCGCGCTGTGGCACTGCCCTCACCTGCTGGTGCTGGACGAG 1550145 Query 280800 CCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 || |||||||| ||||||||||| || ||||| ||| Sbjct 1550144 CCAACCAACTACCTGGACCGCGACTCGCTCGGCGCGCTG 1550106 >seq24 Length=1457258 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 10/82 (12%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTT----------AATCTAGTGGTCGT 142553 ||||||||||||||||||||||||||| || ||||| || || |||||||| Sbjct 863569 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTACAAAAGTGAAACCTTGTGGTCGT 863628 Query 142554 GGGTTCGAGCCCCACATCGGGC 142575 ||||||||||||||||| |||| Sbjct 863629 GGGTTCGAGCCCCACATTGGGC 863650 >seq20 Length=1589639 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 251583 CTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATG 251642 || |||||| | |||||||||||||| |||||||| | | ||||| ||||| | | Sbjct 1012937 CTGCAGAGACAGGAGCTCCATGAAGTCAAAGGGGTTGGCCACGTTGTAGTGCTTCTGGTT 1012996 Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGA 251702 || || || |||| | ||||| |||||||||| | ||||| |||||||| | Sbjct 1012997 ACCCAGCGCCACGAGCAGCCGGTCCGCCACAAACTGAATGTACTGGCCCATCAGGCGCGC 1013056 Query 251703 GTTCATGCCAATCA 251716 ||||||||| |||| Sbjct 1013057 GTTCATGCCGATCA 1013070 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 |||||| ||||||||||| ||||||| ||||||||| | ||||| ||||| | || Sbjct 1013389 GTGCAGCCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACC 1013448 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || ||| ||||||||||||| | ||| || || || ||| | | ||||| ||| Sbjct 1013449 GCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCGCTGAAGAAGATGCCCTCCACAGC 1013508 Query 251964 CACCCATGCAACAAGGCGCTC 251984 | | | ||||| || ||||| Sbjct 1013509 CGCAAACGCAACTAGCCGCTC 1013529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027805549585693