Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq305 129 1e-24 seq239 122 2e-22 seq30 122 2e-22 seq207 118 2e-21 seq12 118 2e-21 seq20 111 3e-19 seq47 98.7 2e-15 seq24 98.7 2e-15 seq19 96.9 6e-15 >seq305 Length=23945 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 224392 CTTACCCCCGCCAACCGTCCACATTTCAGAGCACGTCTTCTTCACGAATTCAGTGCTGTG 224451 ||| || ||||| || ||||| ||| |||| | | ||||| || || ||| Sbjct 3877 CTTGCCGCCGCCGACAATCCACCGCTCATTGCACAGCGCGCTGACGAACTCGTTGTGGTG 3936 Query 224452 AGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAGCGA 224511 ||| |||| || | ||||||||||| || || |||| | || ||||| ||||| Sbjct 3937 AGAGATAATGACAATGCCGCCGCCGAAGTCCTTAATGGCGCCGGCCAGAGCGCCGAGCGA 3996 Query 224512 CTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCACAG 224571 || ||||| ||| |||| || ||||| ||||| | ||||| ||||||| ||||||| Sbjct 3997 GTCACGGTCCAGGTAGTTGGTGGGCTCGTCCAGCACGATAAGGTGGGGGTTCTGCCACGT 4056 Query 224572 GGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCG 224627 ||| ||| | | ||| | ||| |||||||| ||||| || || ||||||||| ||| Sbjct 4057 GGCAGCAGCCAGCACGACCTTGACCTTCTGGCCGCCCGACAGACCGCGGATCTGCG 4112 Score = 118 bits (130), Expect = 2e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 225009 TGTCCAGGTGGTTCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGT 225068 |||||||||| ||||| | |||||||| || ||||| || ||||| || || || | || Sbjct 5490 TGTCCAGGTGCTTCTCCAGGTGGTGGAAGGCGTGCTGCGCCACGTAGGCGATACGGAGGT 5549 Query 225069 TGGGATGCTTCCACACAGAGCCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGA 225128 |||| ||||||||||| | ||| || || | ||||||| || || |||||||||| Sbjct 5550 TGGGGTGCTTCCACACCGTGCCGGAGGTGGGCTCAACCTCGCCAGTCAGCACCTTGATGA 5609 Query 225129 GCGTAGTCTTGCCCGCACCATTGGGGCC 225156 | || | |||||| ||||| |||||||| Sbjct 5610 GGGTCGACTTGCCGGCACCGTTGGGGCC 5637 >seq239 Length=30718 Score = 122 bits (134), Expect = 2e-22 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 115 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 174 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 175 CCCACATTGGGC 186 >seq30 Length=1267136 Score = 122 bits (134), Expect = 2e-22 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 80432 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 80373 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 80372 CCCACATTGGGC 80361 >seq207 Length=48683 Score = 118 bits (130), Expect = 2e-21 Identities = 177/248 (71%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 173317 CCTCGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATGATGGCACGTGC 173376 ||| || || || ||||| || | || |||||||| || ||||| |||| || || || Sbjct 9277 CCTGGACCCCACCAACCCCTACTCGGCTGCCAAGGCCGGCGCCGAGCTGATCGCGCGCGC 9336 Query 173377 ATA--TCACACATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGC 173434 || |||| || | |||||| | || ||||| | || ||||| ||||| ||||| || Sbjct 9337 CTACATCAC-CAGC-TACAAGATGCCCATCATCATCACCCGCGGTAACAACGTGTACGGG 9394 Query 173435 CCGCATCAGTTCCCCGAAAAAATGATCCCAAAATTTATTCTTCGCGCAACCCGTGGCCTG 173494 ||||| ||||||||||| || | ||||| || || | || | || | || ||| | Sbjct 9395 CCGCACCAGTTCCCCGAGAAGCTCATCCCCAAGTTCACCCTCCTGGCGGCGCGCGGCAAG 9454 Query 173495 GACCTCCCCATCCACGGGGACGGCGGGGCTTTGCGGTCGTATTTGTATGTTGATGACGTG 173554 ||||| ||| | ||||| |||||| | |||| || || | || || || |||||| Sbjct 9455 GACCTGCCCGTGCACGGCGACGGCAGCAGCGTGCGCTCCTACCTATACGTGGAGGACGTG 9514 Query 173555 GCAGAGGC 173562 || ||||| Sbjct 9515 GCGGAGGC 9522 >seq12 Length=2772333 Score = 118 bits (130), Expect = 2e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 |||||||| ||||| |||||||| ||| |||| || ||||| ||||| | | | ||| Sbjct 1550107 AGCGCGCCGAGCGAGTCGCGGTCCAGGTAGTTGGTTGGCTCGTCCAGCACCAGCAGGTGA 1550166 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 ||||| |||||||| || || ||| ||||||||| |||||||| ||||| || |||||| Sbjct 1550167 GGGCAGTGCCACAGCGCGGCCGCAAGCACCAGCTTGACCTTCTGGCCGCCCGACAGGCCG 1550226 Query 224618 CGGAT 224622 ||||| Sbjct 1550227 CGGAT 1550231 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 224988 GGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCATGCTGGG 225047 |||||||||||||||| |||||||||||||||| ||| | || || | || ||||| | Sbjct 1551702 GGATGTACTGGTTGGGCGTCATGTCCAGGTGGTCCTCCAGGTGATGAAGCGCGTGCTGCG 1551761 Query 225048 CTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCC 225091 ||||| |||| ||||| |||| |||||| |||| | |||| Sbjct 1551762 ACACGTATGCCACGCGCACGTTGATGTGCTTCGACACCGTGCCC 1551805 >seq20 Length=1589639 Score = 111 bits (122), Expect = 3e-19 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| |||||||| ||||| || |||||||||||| | || || || ||| Sbjct 968651 CCCTCCTTGTCCTGAATCTTGGCCTTAACATTCTCGATGGTGTCGGAAGACTCCACCTCC 968710 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || |||||||||||||||||||| |||||||| Sbjct 968711 AGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 968754 Score = 96.9 bits (106), Expect = 6e-15 Identities = 113/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312 ||| || ||||||||||||||||||| ||||||||| || || ||||||||||| || Sbjct 1013389 GTGCAGCCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACC 1013448 Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCCACG 10370 || || |||||||| || | ||||||||| ||| || |||||| |||||||| Sbjct 1013449 GCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCGCTGA--AGAAGATGCCCTCCACA 1013506 Query 10371 CACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 | | | || || || ||||| |||||| Sbjct 1013507 GCCGCAAACGCAACTAGCCGCTCCCCGAAGG 1013537 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/209 (71%), Gaps = 13/209 (6%) Strand=Plus/Plus Query 9996 AGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCG 10055 || || | |||||||||||||||||||||||| | || | ||||| ||| ||| Sbjct 1012941 AGAGACAGGAGCTCCATGAAGTCAAAGGGGTTGGCCACGTTGTAGTGCTTCTGGTTACCC 1013000 Query 10056 AGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTC 10115 || || || | ||||| ||||| |||| |||||||||| ||||||| || |||| Sbjct 1013001 AGCGCCACGAGCAGCCGGTCCGCCACAAACTGAATGTACTGGCCCATCAGGCGCGCGTTC 1013060 Query 10116 ATGCCAATCATG-----CGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGA 10170 ||||| |||| | |||||| | | ||| |||| || |||| ||| |||||| Sbjct 1013061 ATGCCGATCAGGTCCACCGGCAGCGCGT-CCGT-GCAA---AACTCCTGCTCGATGGCGA 1013115 Query 10171 CCGCTTCCTCGACGATGCTCTTTACCACG 10199 ||| ||||| |||| ||| | |||| Sbjct 1013116 CCG---CCTCGGTGATGATCTGCAGCACG 1013141 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| || ||||| ||||| ||| |||||||||||| | || || || ||| Sbjct 965276 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCC 965335 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || || || || ||||| || || |||||||| Sbjct 965336 AGGGTGATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 965379 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| || ||||| ||||| ||| |||||||||||| | || || || ||| Sbjct 965709 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCC 965768 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || || || || ||||| || || |||||||| Sbjct 965769 AGGGTGATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 965812 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| || ||||| ||||| ||| |||||||||||| | || || || ||| Sbjct 966142 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCC 966201 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || || || || ||||| || || |||||||| Sbjct 966202 AGGGTGATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 966245 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| || ||||| ||||| ||| |||||||||||| | || || || ||| Sbjct 968129 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCC 968188 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || || || || ||||| || || |||||||| Sbjct 968189 AGGGTGATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 968232 >seq47 Length=1007904 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| |||||||| ||||| || |||||||||||| | || || || || Sbjct 1003112 CCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCTCG 1003171 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || |||||||||||||| ||||| || ||||| Sbjct 1003172 AGGGTGATGGTCTTACCCGTGAGGGTCTTAACGAAGATTTGCAT 1003215 >seq24 Length=1457258 Score = 98.7 bits (108), Expect = 2e-15 Identities = 70/82 (85%), Gaps = 10/82 (12%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTT----------AACCTTGTGGTCGT 84505 ||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 863569 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTACAAAAGTGAAACCTTGTGGTCGT 863628 Query 84506 GGGTTCGAGCCCCACATCGGGC 84527 ||||||||||||||||| |||| Sbjct 863629 GGGTTCGAGCCCCACATTGGGC 863650 >seq19 Length=1619492 Score = 96.9 bits (106), Expect = 6e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| |||||||||||||| || ||| || ||||| | || || |||||| Sbjct 1128566 CCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATCGTGTCAGAGGACTCCACTTCC 1128507 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | ||| ||||| || ||||| |||||||| || || ||||||||| || Sbjct 1128506 AGGGTAATGGTCTTGCCCGTCAGGGTCTTAACAAAAATCTGCATTTTG 1128459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921595062375560