Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09]
2,373 sequences; 148,806,073 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq305 129 1e-24
seq239 122 2e-22
seq30 122 2e-22
seq207 118 2e-21
seq12 118 2e-21
seq20 111 3e-19
seq47 98.7 2e-15
seq24 98.7 2e-15
seq19 96.9 6e-15
>seq305
Length=23945
Score = 129 bits (142), Expect = 1e-24
Identities = 170/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 224392 CTTACCCCCGCCAACCGTCCACATTTCAGAGCACGTCTTCTTCACGAATTCAGTGCTGTG 224451
||| || ||||| || ||||| ||| |||| | | ||||| || || |||
Sbjct 3877 CTTGCCGCCGCCGACAATCCACCGCTCATTGCACAGCGCGCTGACGAACTCGTTGTGGTG 3936
Query 224452 AGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAGCGA 224511
||| |||| || | ||||||||||| || || |||| | || ||||| |||||
Sbjct 3937 AGAGATAATGACAATGCCGCCGCCGAAGTCCTTAATGGCGCCGGCCAGAGCGCCGAGCGA 3996
Query 224512 CTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCACAG 224571
|| ||||| ||| |||| || ||||| ||||| | ||||| ||||||| |||||||
Sbjct 3997 GTCACGGTCCAGGTAGTTGGTGGGCTCGTCCAGCACGATAAGGTGGGGGTTCTGCCACGT 4056
Query 224572 GGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCG 224627
||| ||| | | ||| | ||| |||||||| ||||| || || ||||||||| |||
Sbjct 4057 GGCAGCAGCCAGCACGACCTTGACCTTCTGGCCGCCCGACAGACCGCGGATCTGCG 4112
Score = 118 bits (130), Expect = 2e-21
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 225009 TGTCCAGGTGGTTCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGT 225068
|||||||||| ||||| | |||||||| || ||||| || ||||| || || || | ||
Sbjct 5490 TGTCCAGGTGCTTCTCCAGGTGGTGGAAGGCGTGCTGCGCCACGTAGGCGATACGGAGGT 5549
Query 225069 TGGGATGCTTCCACACAGAGCCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGA 225128
|||| ||||||||||| | ||| || || | ||||||| || || ||||||||||
Sbjct 5550 TGGGGTGCTTCCACACCGTGCCGGAGGTGGGCTCAACCTCGCCAGTCAGCACCTTGATGA 5609
Query 225129 GCGTAGTCTTGCCCGCACCATTGGGGCC 225156
| || | |||||| ||||| ||||||||
Sbjct 5610 GGGTCGACTTGCCGGCACCGTTGGGGCC 5637
>seq239
Length=30718
Score = 122 bits (134), Expect = 2e-22
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 174
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 175 CCCACATTGGGC 186
>seq30
Length=1267136
Score = 122 bits (134), Expect = 2e-22
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 80432 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 80373
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 80372 CCCACATTGGGC 80361
>seq207
Length=48683
Score = 118 bits (130), Expect = 2e-21
Identities = 177/248 (71%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 173317 CCTCGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATGATGGCACGTGC 173376
||| || || || ||||| || | || |||||||| || ||||| |||| || || ||
Sbjct 9277 CCTGGACCCCACCAACCCCTACTCGGCTGCCAAGGCCGGCGCCGAGCTGATCGCGCGCGC 9336
Query 173377 ATA--TCACACATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGC 173434
|| |||| || | |||||| | || ||||| | || ||||| ||||| ||||| ||
Sbjct 9337 CTACATCAC-CAGC-TACAAGATGCCCATCATCATCACCCGCGGTAACAACGTGTACGGG 9394
Query 173435 CCGCATCAGTTCCCCGAAAAAATGATCCCAAAATTTATTCTTCGCGCAACCCGTGGCCTG 173494
||||| ||||||||||| || | ||||| || || | || | || | || ||| |
Sbjct 9395 CCGCACCAGTTCCCCGAGAAGCTCATCCCCAAGTTCACCCTCCTGGCGGCGCGCGGCAAG 9454
Query 173495 GACCTCCCCATCCACGGGGACGGCGGGGCTTTGCGGTCGTATTTGTATGTTGATGACGTG 173554
||||| ||| | ||||| |||||| | |||| || || | || || || ||||||
Sbjct 9455 GACCTGCCCGTGCACGGCGACGGCAGCAGCGTGCGCTCCTACCTATACGTGGAGGACGTG 9514
Query 173555 GCAGAGGC 173562
|| |||||
Sbjct 9515 GCGGAGGC 9522
>seq12
Length=2772333
Score = 118 bits (130), Expect = 2e-21
Identities = 101/125 (81%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557
|||||||| ||||| |||||||| ||| |||| || ||||| ||||| | | | |||
Sbjct 1550107 AGCGCGCCGAGCGAGTCGCGGTCCAGGTAGTTGGTTGGCTCGTCCAGCACCAGCAGGTGA 1550166
Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617
||||| |||||||| || || ||| ||||||||| |||||||| ||||| || ||||||
Sbjct 1550167 GGGCAGTGCCACAGCGCGGCCGCAAGCACCAGCTTGACCTTCTGGCCGCCCGACAGGCCG 1550226
Query 224618 CGGAT 224622
|||||
Sbjct 1550227 CGGAT 1550231
Score = 89.7 bits (98), Expect = 9e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 224988 GGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCATGCTGGG 225047
|||||||||||||||| |||||||||||||||| ||| | || || | || ||||| |
Sbjct 1551702 GGATGTACTGGTTGGGCGTCATGTCCAGGTGGTCCTCCAGGTGATGAAGCGCGTGCTGCG 1551761
Query 225048 CTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCC 225091
||||| |||| ||||| |||| |||||| |||| | ||||
Sbjct 1551762 ACACGTATGCCACGCGCACGTTGATGTGCTTCGACACCGTGCCC 1551805
>seq20
Length=1589639
Score = 111 bits (122), Expect = 3e-19
Identities = 87/104 (84%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
|| |||||||| |||||||| ||||| || |||||||||||| | || || || |||
Sbjct 968651 CCCTCCTTGTCCTGAATCTTGGCCTTAACATTCTCGATGGTGTCGGAAGACTCCACCTCC 968710
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||||||| || |||||||||||||||||||| ||||||||
Sbjct 968711 AGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 968754
Score = 96.9 bits (106), Expect = 6e-15
Identities = 113/151 (75%), Gaps = 4/151 (3%)
Strand=Plus/Plus
Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312
||| || ||||||||||||||||||| ||||||||| || || ||||||||||| ||
Sbjct 1013389 GTGCAGCCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACC 1013448
Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCCACG 10370
|| || |||||||| || | ||||||||| ||| || |||||| ||||||||
Sbjct 1013449 GCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCGCTGA--AGAAGATGCCCTCCACA 1013506
Query 10371 CACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401
| | | || || || ||||| ||||||
Sbjct 1013507 GCCGCAAACGCAACTAGCCGCTCCCCGAAGG 1013537
Score = 91.5 bits (100), Expect = 3e-13
Identities = 148/209 (71%), Gaps = 13/209 (6%)
Strand=Plus/Plus
Query 9996 AGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCG 10055
|| || | |||||||||||||||||||||||| | || | ||||| ||| |||
Sbjct 1012941 AGAGACAGGAGCTCCATGAAGTCAAAGGGGTTGGCCACGTTGTAGTGCTTCTGGTTACCC 1013000
Query 10056 AGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTC 10115
|| || || | ||||| ||||| |||| |||||||||| ||||||| || ||||
Sbjct 1013001 AGCGCCACGAGCAGCCGGTCCGCCACAAACTGAATGTACTGGCCCATCAGGCGCGCGTTC 1013060
Query 10116 ATGCCAATCATG-----CGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGA 10170
||||| |||| | |||||| | | ||| |||| || |||| ||| ||||||
Sbjct 1013061 ATGCCGATCAGGTCCACCGGCAGCGCGT-CCGT-GCAA---AACTCCTGCTCGATGGCGA 1013115
Query 10171 CCGCTTCCTCGACGATGCTCTTTACCACG 10199
||| ||||| |||| ||| | ||||
Sbjct 1013116 CCG---CCTCGGTGATGATCTGCAGCACG 1013141
Score = 89.7 bits (98), Expect = 9e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
|| |||||||| || ||||| ||||| ||| |||||||||||| | || || || |||
Sbjct 965276 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCC 965335
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||||||| || || || || ||||| || || ||||||||
Sbjct 965336 AGGGTGATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 965379
Score = 89.7 bits (98), Expect = 9e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
|| |||||||| || ||||| ||||| ||| |||||||||||| | || || || |||
Sbjct 965709 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCC 965768
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||||||| || || || || ||||| || || ||||||||
Sbjct 965769 AGGGTGATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 965812
Score = 89.7 bits (98), Expect = 9e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
|| |||||||| || ||||| ||||| ||| |||||||||||| | || || || |||
Sbjct 966142 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCC 966201
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||||||| || || || || ||||| || || ||||||||
Sbjct 966202 AGGGTGATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 966245
Score = 89.7 bits (98), Expect = 9e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
|| |||||||| || ||||| ||||| ||| |||||||||||| | || || || |||
Sbjct 968129 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCC 968188
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||||||| || || || || ||||| || || ||||||||
Sbjct 968189 AGGGTGATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 968232
>seq47
Length=1007904
Score = 98.7 bits (108), Expect = 2e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
|| |||||||| |||||||| ||||| || |||||||||||| | || || || ||
Sbjct 1003112 CCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCTCG 1003171
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||||||| || |||||||||||||| ||||| || |||||
Sbjct 1003172 AGGGTGATGGTCTTACCCGTGAGGGTCTTAACGAAGATTTGCAT 1003215
>seq24
Length=1457258
Score = 98.7 bits (108), Expect = 2e-15
Identities = 70/82 (85%), Gaps = 10/82 (12%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTT----------AACCTTGTGGTCGT 84505
||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 863569 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTACAAAAGTGAAACCTTGTGGTCGT 863628
Query 84506 GGGTTCGAGCCCCACATCGGGC 84527
||||||||||||||||| ||||
Sbjct 863629 GGGTTCGAGCCCCACATTGGGC 863650
>seq19
Length=1619492
Score = 96.9 bits (106), Expect = 6e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
|| |||||||| |||||||||||||| || ||| || ||||| | || || ||||||
Sbjct 1128566 CCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATCGTGTCAGAGGACTCCACTTCC 1128507
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
| ||| ||||| || ||||| |||||||| || || ||||||||| ||
Sbjct 1128506 AGGGTAATGGTCTTGCCCGTCAGGGTCTTAACAAAAATCTGCATTTTG 1128459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921595062375560
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