Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq20 159 7e-34 seq3 96.9 7e-15 >seq20 Length=1589639 Score = 159 bits (176), Expect = 7e-34 Identities = 146/182 (80%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 42683 CGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTC 42742 ||| || || ||||| ||| |||| || || ||| | || || ||||||||||||||| Sbjct 1013545 CGAGGCGACCTTCGGGGAGCGGCTAGTTGCGTTTGCGGCTGTGGAGGGCATCTTCTTCAG 1013486 Query 42743 GGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCT 42801 ||| | ||| ||| ||||||||||||||| || ||| || |||||||| ||||||| Sbjct 1013485 CGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGTCTC-ATGCCCGGCCTCACCT 1013427 Query 42802 TCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 |||| ||||| ||||||||| | |||||||||||||| | |||||||||||||| || | Sbjct 1013426 TCTCCAACGAGCTCATCAGCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCTGCTCT 1013367 Query 42862 TC 42863 || Sbjct 1013366 TC 1013365 Score = 129 bits (142), Expect = 1e-24 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 244048 GTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTC 244107 |||||| ||||||| ||| | || | | | ||||||| |||||| ||| ||||| Sbjct 869630 GTTCCAGAGGCCCATGCGGTTGAGGTCGTGCAGCAGGTGCTGGTTCACGACCGTGAACTC 869571 Query 244108 TCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTT 244167 || ||||||||||||||| ||||| |||| | || ||||| | || ||| |||| Sbjct 869570 GCCAGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTT 869511 Query 244168 GCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCAC 244227 |||||| ||||||| ||| || || |||||||||| ||||||||| || || | ||| Sbjct 869510 GCCCAGGATCTGCGACGTCGAGGCGGTGGGCATGGGCGCCACCAGCAGGCTATTGCGCAC 869451 Query 244228 GCCGTGCCTCTG-GATGCGG 244246 ||||| || || ||||||| Sbjct 869450 ACCGTG-CTGTGCGATGCGG 869432 Score = 113 bits (124), Expect = 9e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||||| ||||||||| ||| | | ||||||||| | || | | ||| || Sbjct 867477 CTCCATGAAGAGGTTGGGGATCCAAAGGCCATAGAAGAGGTCGCGGGCGCGCGCCTCCTC 867418 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | ||| |||||| | ||| |||| ||||| || ||||| |||||||||||||||| Sbjct 867417 CTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCGAACACGTCAGCGTGCCAGGGCTCCAT 867358 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 ||||| || | ||||| |||||| || ||||||||||| Sbjct 867357 GTAGATGGCAAACGCGCCCTTGCGCTTGCCACCGCCCTGGTCCAC 867313 Score = 102 bits (112), Expect = 2e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 ||||||||| || ||||| ||||| ||||| |||||||||||||||||||| || | Sbjct 868109 TGGTGTACTCGATGATCTCTGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTTCT 868050 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCT 244838 | || ||||| |||||||| ||||||||| |||||| |||| ||||| || | || Sbjct 868049 GGTTCGACTTCTCGTTGCAGTGGTCCTTGTACAGCATGTAGGGGTTGCCGGTTTCCACCT 867990 Query 244839 G 244839 | Sbjct 867989 G 867989 Score = 96.9 bits (106), Expect = 7e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 244292 TTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTC 244351 |||| |||||||||||| |||||| | |||| ||||||||| ||| |||| ||| Sbjct 869217 TTGACGCCCCACATGTCGGGCTGCAGGATGCCCTGGCTGACGGGCGAGCCGGCGTACGTC 869158 Query 244352 GGGTAGGGACCGTCGCGCTGGGCCAGCTTACA-GCTCTCGTCGAGGGCGGCGTAGTAGAT 244410 ||||| ||||| |||| ||||||| ||| | || | || |||| || ||| || Sbjct 869157 TCGTAGGTGCCGTCCCGCTCCGCCAGCTCACACGAGGCCGAC-AGAGCGGAGTGGTATAT 869099 Query 244411 GGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCAT 244470 | |||||||||| |||||| ||| |||| | || |||||| ||||||| Sbjct 869098 GACCTCGAAGATCTGGCTGTTCAGCTCGGCTGCCTCGGGCGAGTCGAAGGGCATGCCCAG 869039 Query 244471 CATCATGAAGACGTCGGCCAGTCCCTG 244497 || ||||| ||| ||||| ||||| Sbjct 869038 CAGGATGAACGTGTCCGCCAGGCCCTG 869012 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/183 (73%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 42909 ATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCC 42968 |||||||| ||||| || | |||||| ||||||| |||| | ||||||| ||| | Sbjct 1013131 ATCATCACCGAGGCGGTCGCCATCGAGCAGGAGTTTTGCACGGACGCGCTGCCGGTGGAC 1013072 Query 42969 CTGGTCGGCATGAAC-CACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT 43027 ||| ||||||||||| | || ||| ||| || ||||||| |||| || || |||| || Sbjct 1013071 CTGATCGGCATGAACGCGCG-CCTGATGGGCCAGTACATTCAGTTTGTGGCGGACCGGCT 1013013 Query 43028 CCT-GTGCCAGATGGGT-CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATG 43085 || ||| | | ||||| ||| | | ||||||| | | |||||| ||||| ||| Sbjct 1013012 GCTCGTGGC-GCTGGGTAACCAGAAG-CACTACAACGTGGCCAACCCCTTTGACTTCATG 1012955 Query 43086 GAG 43088 ||| Sbjct 1012954 GAG 1012952 >seq3 Length=4638507 Score = 96.9 bits (106), Expect = 7e-15 Identities = 87/107 (81%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 42749 CTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGA 42807 |||| ||| ||||||||||||||| || | || | ||||||||| || ||||||||| Sbjct 3971340 CTTCTGCTCGATCTTCTGGCTCAAGAAGC-GCTGCCTGATGCCCGGCCTGTCCTTCTCGA 3971282 Query 42808 ACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGC 42854 ||| ||||||||| | |||||||||||||| | ||||| |||||| Sbjct 3971281 ACGTGCTCATCAGCCGCGACGAGGGGCTGCACTGCGACTTCGCCTGC 3971235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944311188538480