Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq20 114 2e-20 seq29 87.8 2e-12 seq3 87.8 2e-12 >seq20 Length=1589639 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| || |||||||| ||| |||||| || || |||||| || || Sbjct 1013377 GGCAAAGTCGGTGTGCAGCCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCC 1013436 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| |||||||| | |||||| |||| || || || || ||||||||| Sbjct 1013437 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCGCTGAAGAAGAT 1013496 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 ||||||||| ||| ||||||| || ||||| | |||| Sbjct 1013497 GCCCTCCACAGCCGCAAACGCAACTAGCCGCTCCCCGAAGG 1013537 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 113863 CCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACC 113922 |||||| || || ||||| || | || || |||| || || || ||||| || Sbjct 869627 CCAGAGGCCCATGCGGTTGAGGTCGTGCAGCAGGTGCTGGTTCACGACCGTGAACTCGCC 869568 Query 113923 CGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACC 113982 | || ||| | || ||||| |||| ||||| |||||||||||||| ||||| || Sbjct 869567 AGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCC 869508 Query 113983 CAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC 114042 || ||| || | || ||||| ||||||||||| |||| || ||||| || || | ||| Sbjct 869507 CAGGATCTGCGACGTCGAGGCGGTGGGCATGGGCGCCACCAGCAGGCTATTGCGCACACC 869448 Query 114043 CTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTG 114085 | | ||||| || |||||| ||||||| || || Sbjct 869447 GTGCTGTGCGATGCGGTCACGCAGGGCGGGCCAGTCGCAGCTG 869405 >seq29 Length=1309802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || || ||||| || ||||| || || ||| ||| ||||| || |||||| || || Sbjct 708687 CGGTCGAAGCGGCCGGGGCGCAGCAGCGCGGGGTCCAGGATGTCGGCGCGGTTGGTGGCG 708628 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 |||||||| | ||||||||| | | || ||||| ||||||||||||| | || ||| Sbjct 708627 GCGATGACGATGATGCCCGTGTTGCCCTCGAAGCCGTCCATCTCAGTCAGCATCTGGTTG 708568 Query 10907 ATGGTTTGTTCGCGTTCATCATT 10929 | || || ||||| || || || Sbjct 708567 AGCGTCTGCTCGCGCTCGTCGTT 708545 >seq3 Length=4638507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || || ||||| || ||||| || || || | ||| || | || |||||| || || Sbjct 4610982 CGGTCGAAGCGGCCGGGGCGCAGCAGAGCCTGGTCCAGCACGTCGGGGCGGTTGGTGGCG 4610923 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 || | || | || |||||| | | |||||||| |||||||| |||| || || ||| Sbjct 4610922 GCCAGCACGATGACGCCCGTGTTGCCCTCAAAGCCGTCCATCTCGGTCAGCAGCTGGTTG 4610863 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGA 10964 ||||| || ||||| ||||| || || | ||| || || | || || || | Sbjct 4610862 ATGGTCTGCTCGCGCTCATCGTTGCCG--CCGCCCATGCCGGCGCCACGCTGGCGGCCCA 4610805 Query 10965 CGGCGTCAATTTCATCGATGAAAACGATACACGG 10998 | |||||||| ||||||||||| | ||| || || Sbjct 4610804 CAGCGTCAATCTCATCGATGAAGATGATGCAGGG 4610771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597335880998840