Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09]
2,373 sequences; 148,806,073 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq20 114 2e-20
seq29 87.8 2e-12
seq3 87.8 2e-12
>seq20
Length=1589639
Score = 114 bits (126), Expect = 2e-20
Identities = 122/161 (76%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105
|||||| || ||| || |||||||| ||| |||||| || || |||||| || ||
Sbjct 1013377 GGCAAAGTCGGTGTGCAGCCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCC 1013436
Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165
||||||||||| |||||||| | |||||| |||| || || || || |||||||||
Sbjct 1013437 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCGCTGAAGAAGAT 1013496
Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206
||||||||| ||| ||||||| || ||||| | ||||
Sbjct 1013497 GCCCTCCACAGCCGCAAACGCAACTAGCCGCTCCCCGAAGG 1013537
Score = 91.5 bits (100), Expect = 2e-13
Identities = 154/223 (69%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 113863 CCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACC 113922
|||||| || || ||||| || | || || |||| || || || ||||| ||
Sbjct 869627 CCAGAGGCCCATGCGGTTGAGGTCGTGCAGCAGGTGCTGGTTCACGACCGTGAACTCGCC 869568
Query 113923 CGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACC 113982
| || ||| | || ||||| |||| ||||| |||||||||||||| ||||| ||
Sbjct 869567 AGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCC 869508
Query 113983 CAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC 114042
|| ||| || | || ||||| ||||||||||| |||| || ||||| || || | |||
Sbjct 869507 CAGGATCTGCGACGTCGAGGCGGTGGGCATGGGCGCCACCAGCAGGCTATTGCGCACACC 869448
Query 114043 CTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTG 114085
| | ||||| || |||||| ||||||| || ||
Sbjct 869447 GTGCTGTGCGATGCGGTCACGCAGGGCGGGCCAGTCGCAGCTG 869405
>seq29
Length=1309802
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846
|| || ||||| || ||||| || || ||| ||| ||||| || |||||| || ||
Sbjct 708687 CGGTCGAAGCGGCCGGGGCGCAGCAGCGCGGGGTCCAGGATGTCGGCGCGGTTGGTGGCG 708628
Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906
|||||||| | ||||||||| | | || ||||| ||||||||||||| | || |||
Sbjct 708627 GCGATGACGATGATGCCCGTGTTGCCCTCGAAGCCGTCCATCTCAGTCAGCATCTGGTTG 708568
Query 10907 ATGGTTTGTTCGCGTTCATCATT 10929
| || || ||||| || || ||
Sbjct 708567 AGCGTCTGCTCGCGCTCGTCGTT 708545
>seq3
Length=4638507
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846
|| || ||||| || ||||| || || || | ||| || | || |||||| || ||
Sbjct 4610982 CGGTCGAAGCGGCCGGGGCGCAGCAGAGCCTGGTCCAGCACGTCGGGGCGGTTGGTGGCG 4610923
Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906
|| | || | || |||||| | | |||||||| |||||||| |||| || || |||
Sbjct 4610922 GCCAGCACGATGACGCCCGTGTTGCCCTCAAAGCCGTCCATCTCGGTCAGCAGCTGGTTG 4610863
Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGA 10964
||||| || ||||| ||||| || || | ||| || || | || || || |
Sbjct 4610862 ATGGTCTGCTCGCGCTCATCGTTGCCG--CCGCCCATGCCGGCGCCACGCTGGCGGCCCA 4610805
Query 10965 CGGCGTCAATTTCATCGATGAAAACGATACACGG 10998
| |||||||| ||||||||||| | ||| || ||
Sbjct 4610804 CAGCGTCAATCTCATCGATGAAGATGATGCAGGG 4610771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597335880998840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |