Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq20 93.3 5e-14 seq19 93.3 5e-14 >seq20 Length=1589639 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||||||||||| || || ||||| ||||| || || ||| || Sbjct 962746 CGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGCCCG 962805 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| || ||||| || || ||||||||||| Sbjct 962806 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 962846 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||||||||||| || || ||||| ||||| || || ||| || Sbjct 965393 CGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGCCCG 965452 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| || ||||| || || ||||||||||| Sbjct 965453 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 965493 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||||||||||| || || ||||| ||||| || || ||| || Sbjct 965826 CGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGCCCG 965885 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| || ||||| || || ||||||||||| Sbjct 965886 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 965926 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||||||||||| || || ||||| ||||| || || ||| || Sbjct 966259 CGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGCCCG 966318 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| || ||||| || || ||||||||||| Sbjct 966319 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 966359 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||||||||||| || || ||||| ||||| || || ||| || Sbjct 968246 CGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGCCCG 968305 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| || ||||| || || ||||||||||| Sbjct 968306 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 968346 >seq19 Length=1619492 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | |||| ||||| || | ||||||||||| || || ||||| || || Sbjct 1128766 ACCGCCTCGCAGGCGCAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGC 1128707 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 42096 || || ||| |||| || |||||||| || ||||| ||||| ||||||||||||| Sbjct 1128706 GAGCGTGCGCCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGG 1128651 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| || | ||||||||||| || || ||||| || || || || ||| || Sbjct 1129593 CGCAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCG 1129534 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 42096 || || |||||||| || ||||| ||||| ||||||||||||| Sbjct 1129533 TCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGG 1129491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543196686950320