Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09]
2,373 sequences; 148,806,073 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq20 122 1e-22
seq29 87.8 2e-12
>seq20
Length=1589639
Score = 122 bits (134), Expect = 1e-22
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||| || |||||||| ||| |||||| || || |||||| || ||
Sbjct 1013378 GCAAAGTCGGTGTGCAGCCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCG 1013437
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||||||||| |||||||| | |||||| |||| || || ||||| |||||||||
Sbjct 1013438 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCGCTGAAGAAGATG 1013497
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679
||||||||| ||| ||||||| ||| ||||| | ||||
Sbjct 1013498 CCCTCCACAGCCGCAAACGCAACTAGCCGCTCCCCGAAGG 1013537
Score = 104 bits (114), Expect = 3e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883
|||||| || || ||||| || | || ||||||| || || || ||||| ||
Sbjct 869627 CCAGAGGCCCATGCGGTTGAGGTCGTGCAGCAGGTGCTGGTTCACGACCGTGAACTCGCC 869568
Query 115884 CGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACC 115943
| || ||| | || |||||||||| ||||| |||||||||||||| ||||| ||
Sbjct 869567 AGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCC 869508
Query 115944 CAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003
|| ||| || | || ||||| ||||||||||| |||| || ||||| ||||| | |||
Sbjct 869507 CAGGATCTGCGACGTCGAGGCGGTGGGCATGGGCGCCACCAGCAGGCTATTGCGCACACC 869448
>seq29
Length=1309802
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761
|| || ||||| || ||||| || || ||| ||| ||||| || |||||| || ||
Sbjct 708687 CGGTCGAAGCGGCCGGGGCGCAGCAGCGCGGGGTCCAGGATGTCGGCGCGGTTGGTGGCG 708628
Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821
|||||||| | ||||||||| | | |||||||| ||||||||||||| | || |||
Sbjct 708627 GCGATGACGATGATGCCCGTGTTGCCCTCGAAGCCGTCCATCTCAGTCAGCATCTGGTTG 708568
Query 12822 ATGGTTTGTTCACGTTCATCATT 12844
| || || || || || || ||
Sbjct 708567 AGCGTCTGCTCGCGCTCGTCGTT 708545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613489001842680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |