Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq20 122 1e-22 seq29 87.8 2e-12 >seq20 Length=1589639 Score = 122 bits (134), Expect = 1e-22 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| ||| |||||| || || |||||| || || Sbjct 1013378 GCAAAGTCGGTGTGCAGCCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCG 1013437 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| |||| || || ||||| ||||||||| Sbjct 1013438 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCGCTGAAGAAGATG 1013497 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||||||| ||| ||||||| ||| ||||| | |||| Sbjct 1013498 CCCTCCACAGCCGCAAACGCAACTAGCCGCTCCCCGAAGG 1013537 Score = 104 bits (114), Expect = 3e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883 |||||| || || ||||| || | || ||||||| || || || ||||| || Sbjct 869627 CCAGAGGCCCATGCGGTTGAGGTCGTGCAGCAGGTGCTGGTTCACGACCGTGAACTCGCC 869568 Query 115884 CGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACC 115943 | || ||| | || |||||||||| ||||| |||||||||||||| ||||| || Sbjct 869567 AGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCC 869508 Query 115944 CAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 || ||| || | || ||||| ||||||||||| |||| || ||||| ||||| | ||| Sbjct 869507 CAGGATCTGCGACGTCGAGGCGGTGGGCATGGGCGCCACCAGCAGGCTATTGCGCACACC 869448 >seq29 Length=1309802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || || ||||| || ||||| || || ||| ||| ||||| || |||||| || || Sbjct 708687 CGGTCGAAGCGGCCGGGGCGCAGCAGCGCGGGGTCCAGGATGTCGGCGCGGTTGGTGGCG 708628 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 |||||||| | ||||||||| | | |||||||| ||||||||||||| | || ||| Sbjct 708627 GCGATGACGATGATGCCCGTGTTGCCCTCGAAGCCGTCCATCTCAGTCAGCATCTGGTTG 708568 Query 12822 ATGGTTTGTTCACGTTCATCATT 12844 | || || || || || || || Sbjct 708567 AGCGTCTGCTCGCGCTCGTCGTT 708545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613489001842680