Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq20 95.1 3e-14 seq19 93.3 1e-13 seq47 86.0 1e-11 >seq20 Length=1589639 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||| |||| |||||||||||| | || Sbjct 962740 CGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCGAGCGTG 962799 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || ||||||||||| ||||||||||| || |||||||||||||| Sbjct 962800 CGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 962849 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||| |||| |||||||||||| | || Sbjct 965387 CGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCGAGCGTG 965446 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || ||||||||||| ||||||||||| || |||||||||||||| Sbjct 965447 CGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 965496 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||| |||| |||||||||||| | || Sbjct 965820 CGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCGAGCGTG 965879 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || ||||||||||| ||||||||||| || |||||||||||||| Sbjct 965880 CGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 965929 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||| |||| |||||||||||| | || Sbjct 966253 CGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCGAGCGTG 966312 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || ||||||||||| ||||||||||| || |||||||||||||| Sbjct 966313 CGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 966362 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||| |||| |||||||||||| | || Sbjct 968240 CGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCGAGCGTG 968299 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || ||||||||||| ||||||||||| || |||||||||||||| Sbjct 968300 CGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 968349 >seq19 Length=1619492 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || |||||||| || |||||| |||| ||||||||| || | || Sbjct 1128760 TCGCAGGCGCAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGT 1128701 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || ||||||||||| || ||||||||||| ||||||||||| || Sbjct 1128700 GCGCCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGG 1128650 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || |||||||| || |||||| |||| ||||||||| || | || | || || Sbjct 1129591 CAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCGTC 1129532 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| || ||||||||||| ||||||||||| || Sbjct 1129531 CTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGG 1129490 >seq47 Length=1007904 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| |||| || | || || ||||||||||| ||||| |||| Sbjct 1002862 CCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAGA 1002921 Query 199500 TGAGACGCTGCTGGTCCGGA 199519 | |||||||||||||||||| Sbjct 1002922 TCAGACGCTGCTGGTCCGGA 1002941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178885755993991