Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09]
2,373 sequences; 148,806,073 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq19 116 4e-21
seq20 111 2e-19
>seq19
Length=1619492
Score = 116 bits (128), Expect = 4e-21
Identities = 103/126 (82%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405
|| || ||| ||||||| ||||| ||||| | ||||||||| |||||||| |||| ||||
Sbjct 1128641 GGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGGCGC 1128700
Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464
|| ||| ||||||||||||||| ||||| ||| || || || |||||||||| || |
Sbjct 1128701 ACGCTCGCCGACTACAACATCCAGAAGGAGAGC-ACCCTCCACCTGGTGCTGCGCCTGCG 1128759
Query 38465 AGGCGG 38470
||||||
Sbjct 1128760 AGGCGG 1128765
Score = 109 bits (120), Expect = 5e-19
Identities = 94/114 (82%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405
|| || ||| ||||||| ||||| ||||| | ||||||||| |||||||| |||| ||||
Sbjct 1129481 GGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGGCGC 1129540
Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
|| ||| ||||||||||||||| ||||| ||| || || || ||||||||||
Sbjct 1129541 ACGCTCGCCGACTACAACATCCAGAAGGAGAGC-ACCCTCCACCTGGTGCTGCG 1129593
>seq20
Length=1589639
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943
|||| | || ||| ||||||||| |||| |||||||| | | ||||| ||||||
Sbjct 1013364 TGAAGAGCAGGCAGGCAAAGTCGGTGTGCAGCCCCTCGTCGCGGCTGATGAGCTCGTTGG 1013423
Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003
||| || | |||||||||||| ||||| || |||||||| || || | | ||| ||
Sbjct 1013424 AGAAGGTGAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGC 1013483
Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063
| ||||||| |||||| || ||||| || || || || ||||| ||||| || || |
Sbjct 1013484 CGCTGAAGAAGATGCCCTCCACAGCCGCAAACGCAACTAGCCGCTCCCCGAAGGTCGCCT 1013543
Query 133064 C 133064
|
Sbjct 1013544 C 1013544
Score = 98.7 bits (108), Expect = 1e-15
Identities = 100/128 (78%), Gaps = 2/128 (2%)
Strand=Plus/Minus
Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405
|| || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||||
Sbjct 962858 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 962799
Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464
|| ||| |||||||||||||| ||||| ||| || ||||| |||||||||| || |
Sbjct 962798 ACGCTCGCTGACTACAACATCCAGAAGGAGAGC-ACCCTGCACCTGGTGCTGCGCCTGCG 962740
Query 38465 AGGCGGCC 38472
|| ||||
Sbjct 962739 CGGTGGCC 962732
Score = 96.9 bits (106), Expect = 3e-15
Identities = 99/127 (78%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405
|| || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||||
Sbjct 965505 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 965446
Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464
|| ||| |||||||||||||| ||||| ||| || ||||| |||||||||| || |
Sbjct 965445 ACGCTCGCTGACTACAACATCCAGAAGGAGAGC-ACCCTGCACCTGGTGCTGCGCCTGCG 965387
Query 38465 AGGCGGC 38471
|| |||
Sbjct 965386 CGGTGGC 965380
Score = 96.9 bits (106), Expect = 3e-15
Identities = 99/127 (78%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405
|| || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||||
Sbjct 965938 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 965879
Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464
|| ||| |||||||||||||| ||||| ||| || ||||| |||||||||| || |
Sbjct 965878 ACGCTCGCTGACTACAACATCCAGAAGGAGAGC-ACCCTGCACCTGGTGCTGCGCCTGCG 965820
Query 38465 AGGCGGC 38471
|| |||
Sbjct 965819 CGGTGGC 965813
Score = 96.9 bits (106), Expect = 3e-15
Identities = 99/127 (78%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405
|| || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||||
Sbjct 966371 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 966312
Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464
|| ||| |||||||||||||| ||||| ||| || ||||| |||||||||| || |
Sbjct 966311 ACGCTCGCTGACTACAACATCCAGAAGGAGAGC-ACCCTGCACCTGGTGCTGCGCCTGCG 966253
Query 38465 AGGCGGC 38471
|| |||
Sbjct 966252 CGGTGGC 966246
Score = 96.9 bits (106), Expect = 3e-15
Identities = 99/127 (78%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405
|| || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||||
Sbjct 968358 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 968299
Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464
|| ||| |||||||||||||| ||||| ||| || ||||| |||||||||| || |
Sbjct 968298 ACGCTCGCTGACTACAACATCCAGAAGGAGAGC-ACCCTGCACCTGGTGCTGCGCCTGCG 968240
Query 38465 AGGCGGC 38471
|| |||
Sbjct 968239 CGGTGGC 968233
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/210 (72%), Gaps = 7/210 (3%)
Strand=Plus/Plus
Query 132660 GAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT--GGTGCCGATCAGGTCG 132717
|||| ||| || || ||||||||||| |||||||||||| ||| | ||| |
Sbjct 1012949 GAGCTCCATGAAGTCAAAGGGGTTGGCCACGTTGTAGTGCTTCTGGTTACC--CAGCGCC 1013006
Query 132718 ACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCC 132776
|||||||||| ||| ||||| |||| ||||| || ||| | ||| | | | ||
Sbjct 1013007 ACGAGCAGCCGGTCCGCCACAAACTGAATGTACTGGCCCATCAGGCGCGCGTTCATG-CC 1013065
Query 132777 CAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGT 132836
| ||| |||||||||||| || ||| ||| ||||||||||||||||| |||||
Sbjct 1013066 GATCAGGTCCACCGGCAGCGCGTCCGTGCAAAACTCCTGCTCGATGGCGACCGCCTCGGT 1013125
Query 132837 GACGATTTCCCTAACGCGCGCCGCGCTCGG 132866
|| ||| | | ||||||||| || ||||
Sbjct 1013126 GATGATCTGCAGCACGCGCGCCTCG-TCGG 1013154
Score = 87.8 bits (96), Expect = 2e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 133282 AGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAA 133341
|| || |||||||| ||||||||||| | ||||| ||||| |||||||| |||||
Sbjct 1014229 AGGTTCTCGTTGACAATGCCGTCGCTTGACGCGAAGAAGGCGAGCACGTGAGAAATGAAG 1014288
Query 133342 TGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCC 133401
||||||||| |||||||| |||||||| | |||| | | ||||| ||||||
Sbjct 1014289 TGGCGCTCGCCGTCGTTCAGCTTCTCCCAGTGCTTCATGTCATCGCCAAGGTCGACCTCC 1014348
Query 133402 TCG 133404
|||
Sbjct 1014349 TCG 1014351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500157963624320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |