Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq19 116 4e-21 seq20 111 2e-19 >seq19 Length=1619492 Score = 116 bits (128), Expect = 4e-21 Identities = 103/126 (82%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| ||||||| ||||| ||||| | ||||||||| |||||||| |||| |||| Sbjct 1128641 GGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGGCGC 1128700 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 || ||| ||||||||||||||| ||||| ||| || || || |||||||||| || | Sbjct 1128701 ACGCTCGCCGACTACAACATCCAGAAGGAGAGC-ACCCTCCACCTGGTGCTGCGCCTGCG 1128759 Query 38465 AGGCGG 38470 |||||| Sbjct 1128760 AGGCGG 1128765 Score = 109 bits (120), Expect = 5e-19 Identities = 94/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| ||||||| ||||| ||||| | ||||||||| |||||||| |||| |||| Sbjct 1129481 GGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGGCGC 1129540 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 || ||| ||||||||||||||| ||||| ||| || || || |||||||||| Sbjct 1129541 ACGCTCGCCGACTACAACATCCAGAAGGAGAGC-ACCCTCCACCTGGTGCTGCG 1129593 >seq20 Length=1589639 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||| | || ||| ||||||||| |||| |||||||| | | ||||| |||||| Sbjct 1013364 TGAAGAGCAGGCAGGCAAAGTCGGTGTGCAGCCCCTCGTCGCGGCTGATGAGCTCGTTGG 1013423 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | |||||||||||| ||||| || |||||||| || || | | ||| || Sbjct 1013424 AGAAGGTGAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGC 1013483 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | ||||||| |||||| || ||||| || || || || ||||| ||||| || || | Sbjct 1013484 CGCTGAAGAAGATGCCCTCCACAGCCGCAAACGCAACTAGCCGCTCCCCGAAGGTCGCCT 1013543 Query 133064 C 133064 | Sbjct 1013544 C 1013544 Score = 98.7 bits (108), Expect = 1e-15 Identities = 100/128 (78%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| |||| Sbjct 962858 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 962799 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 || ||| |||||||||||||| ||||| ||| || ||||| |||||||||| || | Sbjct 962798 ACGCTCGCTGACTACAACATCCAGAAGGAGAGC-ACCCTGCACCTGGTGCTGCGCCTGCG 962740 Query 38465 AGGCGGCC 38472 || |||| Sbjct 962739 CGGTGGCC 962732 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| |||| Sbjct 965505 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 965446 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 || ||| |||||||||||||| ||||| ||| || ||||| |||||||||| || | Sbjct 965445 ACGCTCGCTGACTACAACATCCAGAAGGAGAGC-ACCCTGCACCTGGTGCTGCGCCTGCG 965387 Query 38465 AGGCGGC 38471 || ||| Sbjct 965386 CGGTGGC 965380 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| |||| Sbjct 965938 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 965879 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 || ||| |||||||||||||| ||||| ||| || ||||| |||||||||| || | Sbjct 965878 ACGCTCGCTGACTACAACATCCAGAAGGAGAGC-ACCCTGCACCTGGTGCTGCGCCTGCG 965820 Query 38465 AGGCGGC 38471 || ||| Sbjct 965819 CGGTGGC 965813 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| |||| Sbjct 966371 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 966312 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 || ||| |||||||||||||| ||||| ||| || ||||| |||||||||| || | Sbjct 966311 ACGCTCGCTGACTACAACATCCAGAAGGAGAGC-ACCCTGCACCTGGTGCTGCGCCTGCG 966253 Query 38465 AGGCGGC 38471 || ||| Sbjct 966252 CGGTGGC 966246 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| |||| Sbjct 968358 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 968299 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 || ||| |||||||||||||| ||||| ||| || ||||| |||||||||| || | Sbjct 968298 ACGCTCGCTGACTACAACATCCAGAAGGAGAGC-ACCCTGCACCTGGTGCTGCGCCTGCG 968240 Query 38465 AGGCGGC 38471 || ||| Sbjct 968239 CGGTGGC 968233 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/210 (72%), Gaps = 7/210 (3%) Strand=Plus/Plus Query 132660 GAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT--GGTGCCGATCAGGTCG 132717 |||| ||| || || ||||||||||| |||||||||||| ||| | ||| | Sbjct 1012949 GAGCTCCATGAAGTCAAAGGGGTTGGCCACGTTGTAGTGCTTCTGGTTACC--CAGCGCC 1013006 Query 132718 ACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCC 132776 |||||||||| ||| ||||| |||| ||||| || ||| | ||| | | | || Sbjct 1013007 ACGAGCAGCCGGTCCGCCACAAACTGAATGTACTGGCCCATCAGGCGCGCGTTCATG-CC 1013065 Query 132777 CAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGT 132836 | ||| |||||||||||| || ||| ||| ||||||||||||||||| ||||| Sbjct 1013066 GATCAGGTCCACCGGCAGCGCGTCCGTGCAAAACTCCTGCTCGATGGCGACCGCCTCGGT 1013125 Query 132837 GACGATTTCCCTAACGCGCGCCGCGCTCGG 132866 || ||| | | ||||||||| || |||| Sbjct 1013126 GATGATCTGCAGCACGCGCGCCTCG-TCGG 1013154 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 133282 AGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAA 133341 || || |||||||| ||||||||||| | ||||| ||||| |||||||| ||||| Sbjct 1014229 AGGTTCTCGTTGACAATGCCGTCGCTTGACGCGAAGAAGGCGAGCACGTGAGAAATGAAG 1014288 Query 133342 TGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCC 133401 ||||||||| |||||||| |||||||| | |||| | | ||||| |||||| Sbjct 1014289 TGGCGCTCGCCGTCGTTCAGCTTCTCCCAGTGCTTCATGTCATCGCCAAGGTCGACCTCC 1014348 Query 133402 TCG 133404 ||| Sbjct 1014349 TCG 1014351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500157963624320