Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq47 98.7 1e-15 seq20 93.3 6e-14 seq121 91.5 2e-13 >seq47 Length=1007904 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || || || |||||||||||||| ||||| || Sbjct 1003215 ATGCAAATCTTCGTTAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCG 1003156 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| || | || ||||||||||| || ||||| || Sbjct 1003155 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 1003112 >seq20 Length=1589639 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || || || || || || |||||||| ||||| ||||| || Sbjct 965379 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCG 965320 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| | || |||||||| || || ||||| || Sbjct 965319 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 965276 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || || || || || || |||||||| ||||| ||||| || Sbjct 965812 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCG 965753 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| | || |||||||| || || ||||| || Sbjct 965752 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 965709 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || || || || || || |||||||| ||||| ||||| || Sbjct 966245 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCG 966186 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| | || |||||||| || || ||||| || Sbjct 966185 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 966142 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || || || || || || |||||||| ||||| ||||| || Sbjct 968232 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCG 968173 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| | || |||||||| || || ||||| || Sbjct 968172 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 968129 Score = 89.7 bits (98), Expect = 7e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 || ||||| ||||| || || ||||| || || || || |||||||| ||||| ||||| Sbjct 968757 AGCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTGGAGTCT 968698 Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 || ||||| ||||| || | || ||||||||||| || ||||| || Sbjct 968697 TCCGACACCATCGAGAATGTTAAGGCCAAGATTCAGGACAAGGAGGG 968651 >seq121 Length=159871 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||||| || || | | | |||| || || || || |||| || || ||| Sbjct 63685 AAGATGAAGGAGACGGCCGAGGCGTACCTGGGCAAGACCGTTAAGCATGCTGTGGTTACT 63626 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || | || || ||||| || ||||| || | | || | Sbjct 63625 GTCCCCGCCTACTTCAACGACGCGCAGCGCCAGGCCACCAAGGATGCCGGCACCATCTCC 63566 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| | | |||||||| || || || || ||||| || || ||||| ||| Sbjct 63565 GGCCTGAACGTGGTCCGCATTATCAACGAGCCCACCGCTGCTGCCATCGCCTATGGCCTG 63506 Query 195842 GACAAGAA 195849 |||||||| Sbjct 63505 GACAAGAA 63498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657842886156560