Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09]
2,373 sequences; 148,806,073 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq20 120 4e-22
seq29 87.8 2e-12
seq3 87.8 2e-12
>seq20
Length=1589639
Score = 120 bits (132), Expect = 4e-22
Identities = 123/161 (76%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074
|||||| || ||| || |||||||| ||| |||||| || || |||||| || ||
Sbjct 1013377 GGCAAAGTCGGTGTGCAGCCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCC 1013436
Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134
||||||||||| |||||||| | |||||| |||| || || ||||| |||||||||
Sbjct 1013437 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCGCTGAAGAAGAT 1013496
Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175
||||||||| ||| ||||||| || ||||| | ||||
Sbjct 1013497 GCCCTCCACAGCCGCAAACGCAACTAGCCGCTCCCCGAAGG 1013537
Score = 91.5 bits (100), Expect = 2e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118103 CCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACC 118162
|||||| || || ||||| || | || || |||| || || || ||||| ||
Sbjct 869627 CCAGAGGCCCATGCGGTTGAGGTCGTGCAGCAGGTGCTGGTTCACGACCGTGAACTCGCC 869568
Query 118163 CGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACC 118222
| || ||| | || ||||| |||| ||||| |||||||||||||| ||||| ||
Sbjct 869567 AGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCC 869508
Query 118223 CAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC 118282
|| ||| || | || ||||| ||||||||||| |||| || ||||| || || | |||
Sbjct 869507 CAGGATCTGCGACGTCGAGGCGGTGGGCATGGGCGCCACCAGCAGGCTATTGCGCACACC 869448
>seq29
Length=1309802
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122
|| || ||||| || ||||| || || ||| ||| ||||| || |||||| || ||
Sbjct 708687 CGGTCGAAGCGGCCGGGGCGCAGCAGCGCGGGGTCCAGGATGTCGGCGCGGTTGGTGGCG 708628
Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182
|||||||| | ||||||||| | | || ||||| ||||||||||||| | || |||
Sbjct 708627 GCGATGACGATGATGCCCGTGTTGCCCTCGAAGCCGTCCATCTCAGTCAGCATCTGGTTG 708568
Query 14183 ATGGTTTGTTCGCGTTCATCATT 14205
| || || ||||| || || ||
Sbjct 708567 AGCGTCTGCTCGCGCTCGTCGTT 708545
>seq3
Length=4638507
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122
|| || ||||| || ||||| || || || | ||| || | || |||||| || ||
Sbjct 4610982 CGGTCGAAGCGGCCGGGGCGCAGCAGAGCCTGGTCCAGCACGTCGGGGCGGTTGGTGGCG 4610923
Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182
|| | || | || |||||| | | |||||||| |||||||| |||| || || |||
Sbjct 4610922 GCCAGCACGATGACGCCCGTGTTGCCCTCAAAGCCGTCCATCTCGGTCAGCAGCTGGTTG 4610863
Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGA 14240
||||| || ||||| ||||| || | || ||| || || | || || || |
Sbjct 4610862 ATGGTCTGCTCGCGCTCATCGTTGCC--GCCGCCCATGCCGGCGCCACGCTGGCGGCCCA 4610805
Query 14241 CGGCGTCAATTTCATCGATGAAAACGATACATGG 14274
| |||||||| ||||||||||| | ||| || ||
Sbjct 4610804 CAGCGTCAATCTCATCGATGAAGATGATGCAGGG 4610771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618416855665880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |