Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq20 145 8e-30 >seq20 Length=1589639 Score = 145 bits (160), Expect = 8e-30 Identities = 133/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTC 79439 |||||||||||||| |||||||| ||| | ||||||||||||| ||| |||||| Sbjct 867477 CTCCATGAAGAGGTTGGGGATCCAAAGGCCATAGAAGAGGTCGCGGGCGCGCGCCTCCTC 867418 Query 79440 GTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAG 79499 | ||| |||||| ||||| || || ||||| | | ||| |||||||| ||||||| Sbjct 867417 CTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCGAACACGTCAGCGTGCCAGGGCTCCAT 867358 Query 79500 ATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTA 79547 |||||||| |||| |||||||||||||| |||||||||| ||||| Sbjct 867357 GTAGATGGCAAACGCGCCCTTGCGCTTGCCACCGCCCTGGTCCACGTA 867310 Score = 141 bits (156), Expect = 1e-28 Identities = 136/172 (79%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 19454 AGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCA 19513 || ||||| ||||||| || ||||| ||||||||| |||| ||||||||| | ||||| Sbjct 867307 AGATACGTGGACCAGGGCGGTGGCAAGCGCAAGGGCGCGTTTGCCATCTACATGGAGCCC 867366 Query 19514 TGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATG 19573 |||||||| ||||| | || ||||| || |||||| |||||| || | |||||| | Sbjct 867367 TGGCACGCTGACGTGTTCGACTTCCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCG 867426 Query 19574 CGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAG 19624 ||| |||||||||||| | |||||| ||||| || |||| ||||||||| Sbjct 867427 CGCGCCCGCGACCTCTTCTATGGCCTT-TGGATCCCCAACCTCTTCATGGAG 867477 Score = 138 bits (152), Expect = 1e-27 Identities = 162/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 20601 TGGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGA 20660 |||| || ||||| | |||||| | |||| ||| || ||||| ||| || || Sbjct 869863 TGGACATTCCCCACGAGCTCAAGTCGCTGTACAAGACGGTGTGGGAGATCA---AGCAGC 869919 Query 20661 GCA---TCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCA 20717 ||| | | |||||||| ||||| ||||||||||||||||||||||| |||||| ||| Sbjct 869920 GCACGCTGGTGGACATGGCCGCCGACCGCGGCGCCTACATCGACCAGTCGCAGTCGTTCA 869979 Query 20718 ATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGC 20777 | ||||||||| | || | | | | ||||| | || |||| | |||| ||||| Sbjct 869980 ACGTCTTCATGCCCGACCCCAACTTCGGCAAGCTCACGTCGCTGCACTTCTACGCCTGGC 870039 Query 20778 ACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACC 20815 |||||| |||||||| ||||||||||| ||||| ||| Sbjct 870040 GCAAGGGCCTCAAGACCGGCATGTACTACCTGCGCACC 870077 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| ||||||||||| |||||||| ||||| ||| |||| | ||||| | Sbjct 870076 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAC 870017 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | |||||| | | | |||| |||||||| ||||| |||||| |||||||||||| Sbjct 870016 GTGAGCTTGCCGAAGTTGGGGTCGGGCATGAAGACGTTGAACGACTGCGACTGGTCGATG 869957 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 || || ||||||||||| |||||||| | | || ||| |||||||| | ||| Sbjct 869956 TAGGCGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCACACCGTC 869897 Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGC 78405 ||| | | ||| ||||| | | ||||||||| Sbjct 869896 TTGTACAGCGACTTGAGCTCGTGGGGAATGTCCAGC 869861 Score = 113 bits (124), Expect = 5e-20 Identities = 122/158 (77%), Gaps = 8/158 (5%) Strand=Plus/Minus Query 78486 CAGGTGCCGGTTAATCATGAC---GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTT 78542 ||||||| |||| || ||| ||||||||| | ||| ||||||| ||||||||| Sbjct 869597 CAGGTGCTGGTT---CACGACCGTGAACTCGCCAGACAGCACGCGGCGCACGTAGATGTT 869541 Query 78543 GGTCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCG 78601 || ||||| ||||| ||||| ||||||||| |||| |||||| | ||||||||||| | Sbjct 869540 GGAGGTGTAGGGCTC-AAAGCACTCGTTGTTGCCCAGGATCTGCGACGTCGAGGCGGTGG 869482 Query 78602 GCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGC 78639 ||||||| || ||||| || ||| || | ||| ||| Sbjct 869481 GCATGGGCGCCACCAGCAGGCTATTGCGCACACCGTGC 869444 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 20117 CAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGC 20176 ||||||||||| ||| ||||| |||| ||| | | |||||| ||| |||| | Sbjct 869012 CAGGGCCTGGCGGACACGTTCATCCTGCTGGGCATGCCCTTCGACTCGCCCGAGGCAGCC 869071 Query 20177 GAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAA 20236 ||||| |||| |||||||||| | | |||||| | || || || ||||| || Sbjct 869072 GAGCTGAACAGCCAGATCTTCGAGGTCATATACCACTCCGCTCTGTCGGCCTCGTGTGAG 869131 Query 20237 CTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATC 20296 || || | ||||||| | |||||||||| | || ||||||| | |||| ||| Sbjct 869132 CTGGCGGAGCGGGACGGCACCTACGAGACGTACGCCGGCTCGCCCGTCAGCCAGGGCATC 869191 Query 20297 CTCCAGCCGGACATGTGGGGCGTCA 20321 || ||||| |||||||||||||||| Sbjct 869192 CTGCAGCCCGACATGTGGGGCGTCA 869216 Score = 109 bits (120), Expect = 6e-19 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 20385 TGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAG-GCT 20443 |||| || ||||||||||| ||||||||||| | |||||| |||| ||||||||| ||| Sbjct 869464 TGCTGGTGGCGCCCATGCCCACCGCCTCGACGTCGCAGATCCTGGGCAACAACGAGTGCT 869523 Query 20444 TTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATG 20503 || ||||| ||||| ||||||||||| |||| || ||| | || |||||| | Sbjct 869524 TT-GAGCCCTACACCTCCAACATCTACGTGCGCCGCGTGCTGTCTGGCGAGTTCACGGTC 869582 Query 20504 GTAAACAAGCACCTGGTCCGCGAC 20527 || ||| |||||||| | | |||| Sbjct 869583 GTGAACCAGCACCTGCTGCACGAC 869606 Score = 105 bits (116), Expect = 7e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| || ||||||||| ||||||||||| | || ||||||||||| ||||| || Sbjct 1013505 GTGGAGGGCATCTTCTTCAGCGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGT 1013446 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||| ||||| | |||||||||||||| || ||| |||||||| || || Sbjct 1013445 CTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGGCTGCA 1013390 Score = 102 bits (112), Expect = 9e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||||||||| |||||||||| || || ||||||||||||| | |||||||||||| Sbjct 868102 CTCGATGATCTCTGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTTCTGGTTCGA 868043 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211 ||||||||| ||| ||||||||| |||||| || | ||||| || ||||| Sbjct 868042 CTTCTCGTTGCAGTGGTCCTTGTACAGCATGTAGGGGTTGCCGGTTTCCACCTG 867989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 19793 CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAAT 19852 ||||| || ||||||| || |||||| ||||||||| | |||| ||||| || Sbjct 867989 CAGGTGGAAACCGGCAACCCCTACATGCTGTACAAGGACCACTGCAACGAGAAGTCGAAC 868048 Query 19853 CAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAG 19906 ||||||||| | ||| | ||||||| ||||||||||| || || ||||| ||| Sbjct 868049 CAGAAGAACCTGGGCACCATCAAGTGCTCCAACCTGTGCACAGAGATCATCGAG 868102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548508529383120