Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq44 131 2e-25 seq20 107 2e-18 >seq44 Length=922537 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 |||||| ||||||| || | |||||| ||||||||||| || |||||| || || ||| Sbjct 37785 CGCGTGTAGATGTAGCGTGCGCTGGCGGCATCCTTGCCGCCCTGCAGCCGGGTACCGAAC 37844 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 || || || | || ||||||| ||||||| ||||||||| | ||| |||| ||| Sbjct 37845 TGGCCGCTCGGGTGCAGCAGGTTGACGTTGTTGCTGCCCACGAAGTCCTGGGCCAGGTTC 37904 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 ||||| | || | || |||| || |||||||| ||||||| ||||| || | ||| Sbjct 37905 ACAATTGCGCTCGCCAAACTCTGCTCGCCGTGGTGGTACGCCGAGTGCTCGGCTACGTAA 37964 Query 152206 CCCGCCAACTGCGCCACCTTCA 152227 | | || ||| ||||||| || Sbjct 37965 GCGGACAGCTGGGCCACCTGCA 37986 Score = 109 bits (120), Expect = 6e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 117296 GCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTA 117355 || || || ||| | ||||| || | ||| || ||||||||||| || || || ||| Sbjct 37779 GCCAGTCGCGTGTAGATGTAGCGTGCGCTGGCGGCATCCTTGCCGCCCTGCAGCCGGGTA 37838 Query 117356 CCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCC 117415 ||||| || || ||||| | || ||||| | ||||||| |||||| |||| || ||| Sbjct 37839 CCGAACTGGCCGCTCGGGTGCAGCAGGTTGACGTTGTTGCTGCCCACGAAGTCCTGGGCC 37898 Query 117416 AAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCC 117475 | ||| ||||| | | | ||| ||| || ||||| ||||||| ||||| || Sbjct 37899 AGGTTCACAATTGCGCTCGCCAAACTCTGCTCGCCGTGGTGGTACGCCGAGTGCTCGGCT 37958 Query 117476 ACGTAGCCCGCCAGCTGAGCCACCTTCA 117503 ||||| | | |||||| ||||||| || Sbjct 37959 ACGTAAGCGGACAGCTGGGCCACCTGCA 37986 >seq20 Length=1589639 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 ||||| |||||| |||||||| ||||| ||||| |||||| | |||||| |||||||| Sbjct 869454 CGCAATAGCCTGCTGGTGGCGCCCATGCCCACCGCCTCGACGTCGCAGATCCTGGGCAAC 869513 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG 55587 |||||| || ||||| ||||| ||||||||||| ||||||| Sbjct 869514 AACGAGTGCTTTGAGCCCTACACCTCCAACATCTACGTGCGCCG 869557 Score = 104 bits (114), Expect = 3e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 ||||| ||||||| ||||| ||||||||||| |||| ||||||||| | ||||| ||| Sbjct 867310 TACGTGGACCAGGGCGGTGGCAAGCGCAAGGGCGCGTTTGCCATCTACATGGAGCCCTGG 867369 Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC 53653 ||||| ||| | | || || || || ||||| ||| || || | || ||| |||| Sbjct 867370 CACGCTGACGTGTTCGACTTCCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCGCGC 867429 Query 53654 TGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 ||| ||||| || || || || ||||| || ||||||||||| Sbjct 867430 GCCCGCGACCTCTTCTATGGC-CTTTGGATCCCCAACCTCTTCATG 867474 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 55709 CTGGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG 55768 ||||| ||||| | |||||| | | ||| ||||||||||||||| ||| Sbjct 869862 CTGGACATTCCCCACGAGCTCAAGTCGCTGTACAAGACGGTGTGGGAGATCAAGCAGCGC 869921 Query 55769 AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 | ||| | |||||| || || || || || |||||||||||||| ||||| | ||| Sbjct 869922 ACGCTGGTGGACATGGCCGCCGACCGCGGCGCCTACATCGACCAGTCGCAGTCGTTCAAC 869981 Query 55829 ATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 |||||||| | || | | |||| | | ||| ||||||| |||| ||| Sbjct 869982 GTCTTCATGCCCGACCCCAACTTCGGCAAGCTCACGTCGCTGCACTTCTACGCCTGGCGC 870041 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 ||||| |||||||| || |||||||| ||||| ||| Sbjct 870042 AAGGGCCTCAAGACCGGCATGTACTACCTGCGCACC 870077 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || ||||||||| |||| || ||||| |||| || || | || ||| || ||| Sbjct 866637 TTCACGCACGCCTCGCCCACGCTGTTTAACGGCGGCACCCCGCGGCCCCAGCTGAGCAGC 866696 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGG 53390 ||||||||| | || ||| || ||||| ||||||||||||||||| || ||||||| Sbjct 866697 TGCTTCCTGCTTGCCATGCGCGACGACTCAATCGACGGCATCTACGACACCCTCAAGG 866754 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || || || | ||| || | || || || || | ||||| ||||| || || |||||| Sbjct 1013396 CCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCGCGCTTC 1013455 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| ||||| | ||||| || || |||||||||||||| || ||| |||||| Sbjct 1013456 TTGAGCCAGAAGATCGAGCAGAACGAGCCGCTGAAGAAGATGCCCTCCACAGCCGCAAAC 1013515 Query 74889 GCGACAAGGCGTTGCGCGAA 74908 || || || || | | |||| Sbjct 1013516 GCAACTAGCCGCTCCCCGAA 1013535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547199768205400