Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09]
2,373 sequences; 148,806,073 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq44 131 2e-25
seq20 107 2e-18
>seq44
Length=922537
Score = 131 bits (144), Expect = 2e-25
Identities = 150/202 (74%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085
|||||| ||||||| || | |||||| ||||||||||| || |||||| || || |||
Sbjct 37785 CGCGTGTAGATGTAGCGTGCGCTGGCGGCATCCTTGCCGCCCTGCAGCCGGGTACCGAAC 37844
Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145
|| || || | || ||||||| ||||||| ||||||||| | ||| |||| |||
Sbjct 37845 TGGCCGCTCGGGTGCAGCAGGTTGACGTTGTTGCTGCCCACGAAGTCCTGGGCCAGGTTC 37904
Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205
||||| | || | || |||| || |||||||| ||||||| ||||| || | |||
Sbjct 37905 ACAATTGCGCTCGCCAAACTCTGCTCGCCGTGGTGGTACGCCGAGTGCTCGGCTACGTAA 37964
Query 152206 CCCGCCAACTGCGCCACCTTCA 152227
| | || ||| ||||||| ||
Sbjct 37965 GCGGACAGCTGGGCCACCTGCA 37986
Score = 109 bits (120), Expect = 6e-19
Identities = 149/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 117296 GCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTA 117355
|| || || ||| | ||||| || | ||| || ||||||||||| || || || |||
Sbjct 37779 GCCAGTCGCGTGTAGATGTAGCGTGCGCTGGCGGCATCCTTGCCGCCCTGCAGCCGGGTA 37838
Query 117356 CCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCC 117415
||||| || || ||||| | || ||||| | ||||||| |||||| |||| || |||
Sbjct 37839 CCGAACTGGCCGCTCGGGTGCAGCAGGTTGACGTTGTTGCTGCCCACGAAGTCCTGGGCC 37898
Query 117416 AAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCC 117475
| ||| ||||| | | | ||| ||| || ||||| ||||||| ||||| ||
Sbjct 37899 AGGTTCACAATTGCGCTCGCCAAACTCTGCTCGCCGTGGTGGTACGCCGAGTGCTCGGCT 37958
Query 117476 ACGTAGCCCGCCAGCTGAGCCACCTTCA 117503
||||| | | |||||| ||||||| ||
Sbjct 37959 ACGTAAGCGGACAGCTGGGCCACCTGCA 37986
>seq20
Length=1589639
Score = 107 bits (118), Expect = 2e-18
Identities = 86/104 (83%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
||||| |||||| |||||||| ||||| ||||| |||||| | |||||| ||||||||
Sbjct 869454 CGCAATAGCCTGCTGGTGGCGCCCATGCCCACCGCCTCGACGTCGCAGATCCTGGGCAAC 869513
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG 55587
|||||| || ||||| ||||| ||||||||||| |||||||
Sbjct 869514 AACGAGTGCTTTGAGCCCTACACCTCCAACATCTACGTGCGCCG 869557
Score = 104 bits (114), Expect = 3e-17
Identities = 124/166 (75%), Gaps = 2/166 (1%)
Strand=Plus/Plus
Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593
||||| ||||||| ||||| ||||||||||| |||| ||||||||| | ||||| |||
Sbjct 867310 TACGTGGACCAGGGCGGTGGCAAGCGCAAGGGCGCGTTTGCCATCTACATGGAGCCCTGG 867369
Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC 53653
||||| ||| | | || || || || ||||| ||| || || | || ||| ||||
Sbjct 867370 CACGCTGACGTGTTCGACTTCCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCGCGC 867429
Query 53654 TGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATG 53698
||| ||||| || || || || ||||| || |||||||||||
Sbjct 867430 GCCCGCGACCTCTTCTATGGC-CTTTGGATCCCCAACCTCTTCATG 867474
Score = 96.9 bits (106), Expect = 4e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 55709 CTGGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG 55768
||||| ||||| | |||||| | | ||| ||||||||||||||| |||
Sbjct 869862 CTGGACATTCCCCACGAGCTCAAGTCGCTGTACAAGACGGTGTGGGAGATCAAGCAGCGC 869921
Query 55769 AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828
| ||| | |||||| || || || || || |||||||||||||| ||||| | |||
Sbjct 869922 ACGCTGGTGGACATGGCCGCCGACCGCGGCGCCTACATCGACCAGTCGCAGTCGTTCAAC 869981
Query 55829 ATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888
|||||||| | || | | |||| | | ||| ||||||| |||| |||
Sbjct 869982 GTCTTCATGCCCGACCCCAACTTCGGCAAGCTCACGTCGCTGCACTTCTACGCCTGGCGC 870041
Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924
||||| |||||||| || |||||||| ||||| |||
Sbjct 870042 AAGGGCCTCAAGACCGGCATGTACTACCTGCGCACC 870077
Score = 82.4 bits (90), Expect = 8e-11
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332
|| ||||||||| |||| || ||||| |||| || || | || ||| || |||
Sbjct 866637 TTCACGCACGCCTCGCCCACGCTGTTTAACGGCGGCACCCCGCGGCCCCAGCTGAGCAGC 866696
Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGG 53390
||||||||| | || ||| || ||||| ||||||||||||||||| || |||||||
Sbjct 866697 TGCTTCCTGCTTGCCATGCGCGACGACTCAATCGACGGCATCTACGACACCCTCAAGG 866754
Score = 82.4 bits (90), Expect = 8e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828
|| || || | ||| || | || || || || | ||||| ||||| || || ||||||
Sbjct 1013396 CCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCGCGCTTC 1013455
Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888
|| | ||| ||||| | ||||| || || |||||||||||||| || ||| ||||||
Sbjct 1013456 TTGAGCCAGAAGATCGAGCAGAACGAGCCGCTGAAGAAGATGCCCTCCACAGCCGCAAAC 1013515
Query 74889 GCGACAAGGCGTTGCGCGAA 74908
|| || || || | | ||||
Sbjct 1013516 GCAACTAGCCGCTCCCCGAA 1013535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547199768205400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |