Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq44 104 3e-17 seq20 104 3e-17 seq19 86.0 7e-12 seq47 84.2 2e-11 seq3 82.4 9e-11 >seq44 Length=922537 Score = 104 bits (114), Expect = 3e-17 Identities = 204/298 (68%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 32051 TGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAG- 32109 || ||||||| |||||||| | ||||| || ||||| |||| || |||||||||||| Sbjct 37986 TGCAGGTGGCCCAGCTGTCCGCTTACGTAGCCGAGCACTCGGCGTACCACCACGGCGAGC 37927 Query 32110 -GCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCT 32168 | || | || ||| ||||| ||||| || ||| |||| || || || ||| | Sbjct 37926 AGAGTTTGGCGAGCGCA--ATTGTGAACCTGGCCCAGGACTTCGTGGGCAGCAACAACGT 37869 Query 32169 GAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGC 32228 ||| | || | || || ||||| || |||||||| || ||||||||||| || Sbjct 37868 CAACCTGCTGCACCCGAGCGGCCAGTTCGGTACCCGGCTGCAGGGCGGCAAGGATGCCGC 37809 Query 32229 GAGCTCCCGTTACATCTTCACCCGTCT--CGCACCTTCGACGCGCAAGATTTTCGACCCG 32286 ||| | || ||||||| ||| || || || | || |||||| | || ||| |||| Sbjct 37808 CAGCGCACGCTACATCTACACGCGACTGGCGGAGCT--AACGCGCCACATGTTCAACCCC 37751 Query 32287 TCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGT 32344 ||||||| | || | | ||| || || || ||| | ||||||||| || Sbjct 37750 AACGACGATGTGCTGTTGACCTACCTCAACGAGGAGGGCCAGAGCATCGAGCCGGAGT 37693 >seq20 Length=1589639 Score = 104 bits (114), Expect = 3e-17 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 80539 CCCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGT 80596 |||||||||||| |||||| |||||||| | |||| || || || ||| ||||||||| Sbjct 869211 CCCCACATGTCGGGCTGCAGGATGCCCTGGCTGACG--GGCGAGCCGGCGTACGTCTCGT 869154 Query 80597 ACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACT 80656 | | ||| ||| || |||||||||||||| || || || | ||| || ||| || Sbjct 869153 AGGTGCCGTCCCGCTCCGCCAGCTCACACGAGGCCGACAGAGCGGAGTGGTATATGACCT 869094 Query 80657 CAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCA 80716 | |||| |||||| || |||| || |||||| | || ||||| || | Sbjct 869093 CGAAGATCTGGCTGTTCAGCTCGGCTGCCTCGGGCGAGTCGAAGGGCATGCCCAGCAGGA 869034 Query 80717 TGAACACGTCAGCCAGGCCCTGA 80739 ||||| ||| |||||||||||| Sbjct 869033 TGAACGTGTCCGCCAGGCCCTGA 869011 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||| ||||||||||| |||||||||||||| |||| |||| | ||||| || Sbjct 870076 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAC 870017 Query 80098 CTGAGCTT-CGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGAT 80156 ||||||| | |||| |||||| |||||||| ||| | ||||| ||||| ||| Sbjct 870016 GTGAGCTTGCCGAAGT-TGGGGTCGGGCATGAAGACGTTGAACGACTGCGACTGGTCGAT 869958 Query 80157 GAAAGCCCCACGATCTGCCGCCATTTC 80183 | | || || || || || ||||| || Sbjct 869957 GTAGGCGCCGCGGTCGGCGGCCATGTC 869931 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| ||||||||||| || || || ||||| ||||| Sbjct 965379 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCG 965320 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | || ||||||| || || |||||||||||||| Sbjct 965319 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 965276 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| ||||||||||| || || || ||||| ||||| Sbjct 965812 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCG 965753 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | || ||||||| || || |||||||||||||| Sbjct 965752 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 965709 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| ||||||||||| || || || ||||| ||||| Sbjct 966245 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCG 966186 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | || ||||||| || || |||||||||||||| Sbjct 966185 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 966142 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| ||||||||||| || || || ||||| ||||| Sbjct 968232 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCG 968173 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | || ||||||| || || |||||||||||||| Sbjct 968172 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 968129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/169 (72%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 81230 CCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCT 81289 ||| |||||| || |||||||| ||| | ||| ||||||||| ||||||||||| Sbjct 867478 CCTCCATGAAGAGGTTGGGGATCCAAAGGCCATAGAAGAGGTCGCGGGCGCGCGCCTCCT 867419 Query 81290 CATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCA 81349 | | || ||||| ||||| || || ||||| | | ||| || ||||| ||||||| Sbjct 867418 CCTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCGAACACGTCAGCGTGCCAGGGCTCCA 867359 Query 81350 GATACACGGCGATCGACCCCTTGCGACGGCCA---CCCTGGTTGACGTA 81395 || | ||| | || |||||||| |||| ||||||| ||||| Sbjct 867358 TGTAGATGGCAAACGCGCCCTTGCGCTTGCCACCGCCCTGGTCCACGTA 867310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| ||||| Sbjct 968754 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTGGAGTCTTCC 968695 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | ||||| || ||||||||||||||||| Sbjct 968694 GACACCATCGAGAATGTTAAGGCCAAGATTCAGGACAAGGAGGG 968651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 |||| || | || ||||| |||||| || || ||||| || || ||||| || | Sbjct 1013528 AGCGGCTAGTTGCGTTTGCGGCTGTGGAGGGCATCTTCTTCAGCGGCTCGTTCTGCTCGA 1013469 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | |||||||| || ||||| || || ||||| || || | || || |||||||| ||| Sbjct 1013468 TCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCA 1013409 Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 || ||||||||||| ||| || ||||| Sbjct 1013408 GCCGCGACGAGGGGCTGCACACCGACTTTGC 1013378 >seq19 Length=1619492 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| || || |||||||| ||||| || || || ||||| Sbjct 1128462 AATGCAGATTTTTGTTAAGACCCTGACGGGCAAGACCATTACCCTGGAAGTGGAGTCCTC 1128521 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||| | || | ||| ||||||| || ||||||||||||||||| Sbjct 1128522 TGACACGATAGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGG 1128566 >seq47 Length=1007904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || || ||||| || || || ||||| ||||| Sbjct 1003215 ATGCAAATCTTCGTTAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCG 1003156 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| ||||||| || ||||||||||||||||| Sbjct 1003155 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 1003112 >seq3 Length=4638507 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 64765 TTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAAC 64824 ||||| || || |||||||| || ||||| |||||||||| || ||||| || |||||| Sbjct 3971339 TTCTGCTCGATCTTCTGGCTCAAGAAGCGCTGCCTGATGCCCGGCCTGTCCTTCTCGAAC 3971280 Query 64825 GAGCTGATCTCTCGGGACGAGGGGCTCCAC 64854 | ||| ||| || ||||||||||| ||| Sbjct 3971279 GTGCTCATCAGCCGCGACGAGGGGCTGCAC 3971250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570293483167760