Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09]
2,373 sequences; 148,806,073 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq44 104 3e-17
seq20 104 3e-17
seq19 86.0 7e-12
seq47 84.2 2e-11
seq3 82.4 9e-11
>seq44
Length=922537
Score = 104 bits (114), Expect = 3e-17
Identities = 204/298 (68%), Gaps = 8/298 (3%)
Strand=Plus/Minus
Query 32051 TGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAG- 32109
|| ||||||| |||||||| | ||||| || ||||| |||| || ||||||||||||
Sbjct 37986 TGCAGGTGGCCCAGCTGTCCGCTTACGTAGCCGAGCACTCGGCGTACCACCACGGCGAGC 37927
Query 32110 -GCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCT 32168
| || | || ||| ||||| ||||| || ||| |||| || || || ||| |
Sbjct 37926 AGAGTTTGGCGAGCGCA--ATTGTGAACCTGGCCCAGGACTTCGTGGGCAGCAACAACGT 37869
Query 32169 GAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGC 32228
||| | || | || || ||||| || |||||||| || ||||||||||| ||
Sbjct 37868 CAACCTGCTGCACCCGAGCGGCCAGTTCGGTACCCGGCTGCAGGGCGGCAAGGATGCCGC 37809
Query 32229 GAGCTCCCGTTACATCTTCACCCGTCT--CGCACCTTCGACGCGCAAGATTTTCGACCCG 32286
||| | || ||||||| ||| || || || | || |||||| | || ||| ||||
Sbjct 37808 CAGCGCACGCTACATCTACACGCGACTGGCGGAGCT--AACGCGCCACATGTTCAACCCC 37751
Query 32287 TCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGT 32344
||||||| | || | | ||| || || || ||| | ||||||||| ||
Sbjct 37750 AACGACGATGTGCTGTTGACCTACCTCAACGAGGAGGGCCAGAGCATCGAGCCGGAGT 37693
>seq20
Length=1589639
Score = 104 bits (114), Expect = 3e-17
Identities = 146/203 (72%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 80539 CCCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGT 80596
|||||||||||| |||||| |||||||| | |||| || || || ||| |||||||||
Sbjct 869211 CCCCACATGTCGGGCTGCAGGATGCCCTGGCTGACG--GGCGAGCCGGCGTACGTCTCGT 869154
Query 80597 ACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACT 80656
| | ||| ||| || |||||||||||||| || || || | ||| || ||| ||
Sbjct 869153 AGGTGCCGTCCCGCTCCGCCAGCTCACACGAGGCCGACAGAGCGGAGTGGTATATGACCT 869094
Query 80657 CAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCA 80716
| |||| |||||| || |||| || |||||| | || ||||| || |
Sbjct 869093 CGAAGATCTGGCTGTTCAGCTCGGCTGCCTCGGGCGAGTCGAAGGGCATGCCCAGCAGGA 869034
Query 80717 TGAACACGTCAGCCAGGCCCTGA 80739
||||| ||| ||||||||||||
Sbjct 869033 TGAACGTGTCCGCCAGGCCCTGA 869011
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/147 (75%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097
|| ||||| ||||||||||| |||||||||||||| |||| |||| | ||||| ||
Sbjct 870076 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAC 870017
Query 80098 CTGAGCTT-CGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGAT 80156
||||||| | |||| |||||| |||||||| ||| | ||||| ||||| |||
Sbjct 870016 GTGAGCTTGCCGAAGT-TGGGGTCGGGCATGAAGACGTTGAACGACTGCGACTGGTCGAT 869958
Query 80157 GAAAGCCCCACGATCTGCCGCCATTTC 80183
| | || || || || || ||||| ||
Sbjct 869957 GTAGGCGCCGCGGTCGGCGGCCATGTC 869931
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| |||||||| ||||||||||| || || || ||||| |||||
Sbjct 965379 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCG 965320
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||| | || ||||||| || || ||||||||||||||
Sbjct 965319 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 965276
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| |||||||| ||||||||||| || || || ||||| |||||
Sbjct 965812 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCG 965753
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||| | || ||||||| || || ||||||||||||||
Sbjct 965752 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 965709
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| |||||||| ||||||||||| || || || ||||| |||||
Sbjct 966245 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCG 966186
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||| | || ||||||| || || ||||||||||||||
Sbjct 966185 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 966142
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| |||||||| ||||||||||| || || || ||||| |||||
Sbjct 968232 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCG 968173
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||| | || ||||||| || || ||||||||||||||
Sbjct 968172 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGG 968129
Score = 87.8 bits (96), Expect = 2e-12
Identities = 121/169 (72%), Gaps = 3/169 (2%)
Strand=Plus/Minus
Query 81230 CCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCT 81289
||| |||||| || |||||||| ||| | ||| ||||||||| |||||||||||
Sbjct 867478 CCTCCATGAAGAGGTTGGGGATCCAAAGGCCATAGAAGAGGTCGCGGGCGCGCGCCTCCT 867419
Query 81290 CATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCA 81349
| | || ||||| ||||| || || ||||| | | ||| || ||||| |||||||
Sbjct 867418 CCTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCGAACACGTCAGCGTGCCAGGGCTCCA 867359
Query 81350 GATACACGGCGATCGACCCCTTGCGACGGCCA---CCCTGGTTGACGTA 81395
|| | ||| | || |||||||| |||| ||||||| |||||
Sbjct 867358 TGTAGATGGCAAACGCGCCCTTGCGCTTGCCACCGCCCTGGTCCACGTA 867310
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || |||||||| || || || ||||| |||||
Sbjct 968754 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTGGAGTCTTCC 968695
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||| | ||| | ||||| || |||||||||||||||||
Sbjct 968694 GACACCATCGAGAATGTTAAGGCCAAGATTCAGGACAAGGAGGG 968651
Score = 84.2 bits (92), Expect = 2e-11
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774
|||| || | || ||||| |||||| || || ||||| || || ||||| || |
Sbjct 1013528 AGCGGCTAGTTGCGTTTGCGGCTGTGGAGGGCATCTTCTTCAGCGGCTCGTTCTGCTCGA 1013469
Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834
| |||||||| || ||||| || || ||||| || || | || || |||||||| |||
Sbjct 1013468 TCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCA 1013409
Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865
|| ||||||||||| ||| || |||||
Sbjct 1013408 GCCGCGACGAGGGGCTGCACACCGACTTTGC 1013378
>seq19
Length=1619492
Score = 86.0 bits (94), Expect = 7e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| ||||| || || |||||||| ||||| || || || |||||
Sbjct 1128462 AATGCAGATTTTTGTTAAGACCCTGACGGGCAAGACCATTACCCTGGAAGTGGAGTCCTC 1128521
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
||| | || | ||| ||||||| || |||||||||||||||||
Sbjct 1128522 TGACACGATAGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGG 1128566
>seq47
Length=1007904
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| || || || ||||| || || || ||||| |||||
Sbjct 1003215 ATGCAAATCTTCGTTAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCG 1003156
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||| | ||| ||||||| || |||||||||||||||||
Sbjct 1003155 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 1003112
>seq3
Length=4638507
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 64765 TTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAAC 64824
||||| || || |||||||| || ||||| |||||||||| || ||||| || ||||||
Sbjct 3971339 TTCTGCTCGATCTTCTGGCTCAAGAAGCGCTGCCTGATGCCCGGCCTGTCCTTCTCGAAC 3971280
Query 64825 GAGCTGATCTCTCGGGACGAGGGGCTCCAC 64854
| ||| ||| || ||||||||||| |||
Sbjct 3971279 GTGCTCATCAGCCGCGACGAGGGGCTGCAC 3971250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570293483167760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |