Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq20 89.7 1e-12 seq19 86.0 1e-11 seq47 84.2 5e-11 >seq20 Length=1589639 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| |||||||| ||||||||||| || || ||||| Sbjct 965276 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCC 965335 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 965336 AGGGTGATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 965379 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| |||||||| ||||||||||| || || ||||| Sbjct 965709 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCC 965768 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 965769 AGGGTGATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 965812 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| |||||||| ||||||||||| || || ||||| Sbjct 966142 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCC 966201 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 966202 AGGGTGATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 966245 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| |||||||| ||||||||||| || || ||||| Sbjct 968129 CCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCC 968188 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 968189 AGGGTGATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 968232 >seq19 Length=1619492 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| |||||| ||||| || || || ||||||||| || || || Sbjct 1128566 CCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATCGTGTCAGAGGACTCCACTTCC 1128507 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || ||||| ||||| || ||||| ||||| | ||||||||| Sbjct 1128506 AGGGTAATGGTCTTGCCCGTCAGGGTCTTAACAAAAATCTGCATTTT 1128460 >seq47 Length=1007904 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| ||||| || ||||||||||| || || |||||| Sbjct 1003112 CCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCTCG 1003171 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | ||||| Sbjct 1003172 AGGGTGATGGTCTTACCCGTGAGGGTCTTAACGAAGATTTGCAT 1003215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159116757070145