Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq20 113 3e-20 seq19 113 3e-20 seq47 89.7 4e-13 >seq20 Length=1589639 Score = 113 bits (124), Expect = 3e-20 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||||||||||| ||||||||||| || Sbjct 965377 CATGCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 965436 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| |||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 965437 AGCGAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 965493 Score = 113 bits (124), Expect = 3e-20 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||||||||||| ||||||||||| || Sbjct 965810 CATGCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 965869 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| |||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 965870 AGCGAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 965926 Score = 113 bits (124), Expect = 3e-20 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||||||||||| ||||||||||| || Sbjct 966243 CATGCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 966302 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| |||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 966303 AGCGAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 966359 Score = 113 bits (124), Expect = 3e-20 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||||||||||| ||||||||||| || Sbjct 968230 CATGCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 968289 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| |||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 968290 AGCGAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 968346 Score = 109 bits (120), Expect = 4e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| || ||||||||||| ||||||||||| || ||| Sbjct 962734 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCG 962793 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || |||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 962794 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 962846 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 || |||| ||||| ||| ||||| ||| || ||| | |||||||||| || ||| Sbjct 968646 GCTCACCCTCCTTGTCCTGAATCTTGGCCTT-AACATTCTCGATGGTGTCGGAAGACTCC 968704 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||||| || || ||||| |||||||||||||| |||||||| |||||| || Sbjct 968705 ACCTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGCTG 968758 >seq19 Length=1619492 Score = 113 bits (124), Expect = 3e-20 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | || ||||||||| || ||||||||||| ||||||||||| || Sbjct 1128769 CATACCGCCTCGCAGGCGCAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC 1128710 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||| |||| |||| ||||||||||| || || ||||| | |||||||| || Sbjct 1128709 GGCGAGCGTGCGCCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTC 1128653 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 44117 CTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGG 44176 || || | || ||||||||| || ||||||||||| ||||||||||| |||||||| | Sbjct 1129599 CTGAGGCGCAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTG 1129540 Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| |||| ||||||||||| || || ||||| | |||||||| || Sbjct 1129539 CGCCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTC 1129493 >seq47 Length=1007904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| ||||| || ||| |||| ||||||||||| |||||||||| Sbjct 1002862 CCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAGA 1002921 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCT 44236 ||| ||||||||| || | ||| | |||| Sbjct 1002922 TCAGACGCTGCTGGTCCGGAGGGATACCT 1002950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359979988740141