Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09]
2,373 sequences; 148,806,073 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq20 136 4e-27
seq19 120 3e-22
seq47 87.8 2e-12
>seq20
Length=1589639
Score = 136 bits (150), Expect = 4e-27
Identities = 102/120 (85%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | |||||| ||||| |||||||||||||| ||||| ||||| |
Sbjct 962733 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGC 962792
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| |||||| |||| || ||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 962793 GAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 962852
Score = 136 bits (150), Expect = 4e-27
Identities = 102/120 (85%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | |||||| ||||| |||||||||||||| ||||| ||||| |
Sbjct 965380 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGC 965439
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| |||||| |||| || ||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 965440 GAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 965499
Score = 136 bits (150), Expect = 4e-27
Identities = 102/120 (85%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | |||||| ||||| |||||||||||||| ||||| ||||| |
Sbjct 965813 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGC 965872
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| |||||| |||| || ||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 965873 GAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 965932
Score = 136 bits (150), Expect = 4e-27
Identities = 102/120 (85%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | |||||| ||||| |||||||||||||| ||||| ||||| |
Sbjct 966246 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGC 966305
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| |||||| |||| || ||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 966306 GAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 966365
Score = 136 bits (150), Expect = 4e-27
Identities = 102/120 (85%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | |||||| ||||| |||||||||||||| ||||| ||||| |
Sbjct 968233 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGC 968292
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| |||||| |||| || ||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 968293 GAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 968352
>seq19
Length=1619492
Score = 120 bits (132), Expect = 3e-22
Identities = 98/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || || || | |||||| || || |||||||||||||| ||||| ||||||| |
Sbjct 1128765 CCGCCTCGCAGGCGCAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCG 1128706
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| |||||| |||| || ||||||||||| ||||| || |||||||| ||||| | |||
Sbjct 1128705 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGG 1128647
Score = 113 bits (124), Expect = 4e-20
Identities = 91/110 (83%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | |||||| || || |||||||||||||| ||||| ||||||| ||| ||||||
Sbjct 1129596 AGGCGCAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGC 1129537
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|||| || ||||||||||| ||||| || |||||||| ||||| | |||
Sbjct 1129536 CCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGG 1129487
>seq47
Length=1007904
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||||| |||||||| |||| || |||||||||||||| || |
Sbjct 1002862 CCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAGA 1002921
Query 41733 TCAGGCGCTGTTGGTCCG 41750
|||| ||||| |||||||
Sbjct 1002922 TCAGACGCTGCTGGTCCG 1002939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462290286907600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |