Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq60 118 2e-21
seq81 107 4e-18
seq3504 87.8 4e-12
>seq60
Length=8765
Score = 118 bits (130), Expect = 2e-21
Identities = 313/470 (67%), Gaps = 6/470 (1%)
Strand=Plus/Plus
Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232
||||| ||||| || || || | | ||| || || || ||| | || ||| || |||
Sbjct 2594 TTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTTC 2653
Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292
||| |||||| ||| | ||| ||| | ||||| |||||| | || ||||||
Sbjct 2654 TGCTCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCAACGAG 2713
Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351
||||| ||| || ||||| || || || | | || | | || | || || | |||
Sbjct 2714 CTCATCTCTCGTGATGAGGGCCTGCA-CACCGACTTTGCCTGCCTGCTCTACTCCATGCT 2772
Query 230352 CCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGA 230411
| || || ||| | ||||| | || || || | || || || |||| |||
Sbjct 2773 CGAGCACCCGCTCGCCATCGAGCGTCTGAACCAGCTCGTGGGCGAGGCCGTGGAAATCGA 2832
Query 230412 AAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTA 230470
|||||||| | || || || | || || | || || |||||||||| | || |
Sbjct 2833 GAAGGAGTTTGTCTGCGATGCCCTGCCG-GTGGATCTCATCGGCATGAACGGCAAGCTGA 2891
Query 230471 TGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAG 230530
|| | |||||||| || || || |||||| | | || || || ||| || |||
Sbjct 2892 TGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGCTCGTCGCCCTGGGTG-CGCCCAAG 2950
Query 230531 -TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACC 230589
| |||||| | | || || || | | ||||||||||| ||||| || || ||||||
Sbjct 2951 CTCTACAACGCCACCAATCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACC 3010
Query 230590 AACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639
||||| ||||| ||||| ||| | ||||| || | | | || || |||||
Sbjct 3011 AACTTTTTCGAGAAGCGCGTCGGAGACTACCAAAAGGCCGGCGTCATGAA 3060
>seq81
Length=8194
Score = 107 bits (118), Expect = 4e-18
Identities = 280/424 (66%), Gaps = 10/424 (2%)
Strand=Plus/Plus
Query 282435 AGGAGACTGGGAAAACAGCTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCG 282494
|| ||||||||| || || | || | ||||||||| ||||| ||||| | |||
Sbjct 1004 AGCAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAGCCG 1063
Query 282495 TCAACATCCGCGTCGGTCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTG 282554
|| ||| || ||||||||||| | ||| ||||| | ||| | ||| |||
Sbjct 1064 TCGTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCGCTGTTGTTG 1123
Query 282555 TACACTTTACCGGTTTGAAGGCCCAAAATTTGTTTGAGCGCGGTG-ATTTCTTCGTTCTT 282613
||| | || ||| || ||||||| || || |||| | || || || ||||
Sbjct 1124 TACTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGA-TGTTTTGAATCTCGGCGTTGCC 1182
Query 282614 TGTGATACTTGCCACAGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAAC 282673
| ||| ||| | || ||||| || ||||| || | ||| |||||||| || || ||
Sbjct 1183 CGAGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAACAC 1242
Query 282674 ACCATATCTCTCGCGACCGACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATC 282733
|| || | ||||| || ||||| ||||| || || | || || || || || ||
Sbjct 1243 TCCGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGAGTC 1302
Query 282734 TCCCTCCGTCAAGATGAGAGTACACATCTTACTATGATTTGTGCCCGCCCATG----CAG 282789
|||||| || | |||||| || ||| | | || ||| |||||||| | |
Sbjct 1303 TCCCTCGGTGAGGATGAGGGTGCAC----TCGGAGGAGTTGCGCCCGCCCGCGTCGTTTG 1358
Query 282790 CATCGTTTAGTTTAGGGATGCCGGACACTCGGGACTTCTTGGCACCGTCGGTTTTCTTCA 282849
| |||| || || || ||||| ||| || || |||||| |||||| |||||||
Sbjct 1359 CGTCGTCGAGCTTGGGAATGCCCAGCACGCGAGAGCGCTTGGCCCCGTCGCCCTTCTTCA 1418
Query 282850 GTTC 282853
| ||
Sbjct 1419 GCTC 1422
Score = 86.0 bits (94), Expect = 1e-11
Identities = 154/225 (68%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 281741 CGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTG 281800
||||||||| || | || || ||| ||| || || |||||||| | || ||||||||
Sbjct 310 CGTGAAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTG 369
Query 281801 ACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGAC 281860
||||| ||||| || |||| | ||| ||| || || | ||||| || ||| ||
Sbjct 370 ACCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCAC 429
Query 281861 GATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACC 281920
||| || ||| || || ||| ||||| || || ||||| | || || || || ||
Sbjct 430 GATGGTGCCCATGAGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCC 489
Query 281921 ACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAA 281965
| ||| || ||||| | ||| ||| |||||| |||||
Sbjct 490 CGCCAGCTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGAA 534
>seq3504
Length=1219
Score = 87.8 bits (96), Expect = 4e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761
|| || | ||||| |||||||||||||||||||| || || |||| || ||||||||||
Sbjct 1096 AATCGGTAGCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 1155
Query 165762 GTTCGAGCCCCAC 165774
|||||||||||||
Sbjct 1156 GTTCGAGCCCCAC 1168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057747206605580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |