Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq60 118 2e-21 seq81 107 4e-18 seq3504 87.8 4e-12 >seq60 Length=8765 Score = 118 bits (130), Expect = 2e-21 Identities = 313/470 (67%), Gaps = 6/470 (1%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||| ||||| || || || | | ||| || || || ||| | || ||| || ||| Sbjct 2594 TTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTTC 2653 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||| |||||| ||| | ||| ||| | ||||| |||||| | || |||||| Sbjct 2654 TGCTCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCAACGAG 2713 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351 ||||| ||| || ||||| || || || | | || | | || | || || | ||| Sbjct 2714 CTCATCTCTCGTGATGAGGGCCTGCA-CACCGACTTTGCCTGCCTGCTCTACTCCATGCT 2772 Query 230352 CCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGA 230411 | || || ||| | ||||| | || || || | || || || |||| ||| Sbjct 2773 CGAGCACCCGCTCGCCATCGAGCGTCTGAACCAGCTCGTGGGCGAGGCCGTGGAAATCGA 2832 Query 230412 AAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTA 230470 |||||||| | || || || | || || | || || |||||||||| | || | Sbjct 2833 GAAGGAGTTTGTCTGCGATGCCCTGCCG-GTGGATCTCATCGGCATGAACGGCAAGCTGA 2891 Query 230471 TGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAG 230530 || | |||||||| || || || |||||| | | || || || ||| || ||| Sbjct 2892 TGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGCTCGTCGCCCTGGGTG-CGCCCAAG 2950 Query 230531 -TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACC 230589 | |||||| | | || || || | | ||||||||||| ||||| || || |||||| Sbjct 2951 CTCTACAACGCCACCAATCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACC 3010 Query 230590 AACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 ||||| ||||| ||||| ||| | ||||| || | | | || || ||||| Sbjct 3011 AACTTTTTCGAGAAGCGCGTCGGAGACTACCAAAAGGCCGGCGTCATGAA 3060 >seq81 Length=8194 Score = 107 bits (118), Expect = 4e-18 Identities = 280/424 (66%), Gaps = 10/424 (2%) Strand=Plus/Plus Query 282435 AGGAGACTGGGAAAACAGCTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCG 282494 || ||||||||| || || | || | ||||||||| ||||| ||||| | ||| Sbjct 1004 AGCAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAGCCG 1063 Query 282495 TCAACATCCGCGTCGGTCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTG 282554 || ||| || ||||||||||| | ||| ||||| | ||| | ||| ||| Sbjct 1064 TCGTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCGCTGTTGTTG 1123 Query 282555 TACACTTTACCGGTTTGAAGGCCCAAAATTTGTTTGAGCGCGGTG-ATTTCTTCGTTCTT 282613 ||| | || ||| || ||||||| || || |||| | || || || |||| Sbjct 1124 TACTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGA-TGTTTTGAATCTCGGCGTTGCC 1182 Query 282614 TGTGATACTTGCCACAGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAAC 282673 | ||| ||| | || ||||| || ||||| || | ||| |||||||| || || || Sbjct 1183 CGAGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAACAC 1242 Query 282674 ACCATATCTCTCGCGACCGACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATC 282733 || || | ||||| || ||||| ||||| || || | || || || || || || Sbjct 1243 TCCGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGAGTC 1302 Query 282734 TCCCTCCGTCAAGATGAGAGTACACATCTTACTATGATTTGTGCCCGCCCATG----CAG 282789 |||||| || | |||||| || ||| | | || ||| |||||||| | | Sbjct 1303 TCCCTCGGTGAGGATGAGGGTGCAC----TCGGAGGAGTTGCGCCCGCCCGCGTCGTTTG 1358 Query 282790 CATCGTTTAGTTTAGGGATGCCGGACACTCGGGACTTCTTGGCACCGTCGGTTTTCTTCA 282849 | |||| || || || ||||| ||| || || |||||| |||||| ||||||| Sbjct 1359 CGTCGTCGAGCTTGGGAATGCCCAGCACGCGAGAGCGCTTGGCCCCGTCGCCCTTCTTCA 1418 Query 282850 GTTC 282853 | || Sbjct 1419 GCTC 1422 Score = 86.0 bits (94), Expect = 1e-11 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 281741 CGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTG 281800 ||||||||| || | || || ||| ||| || || |||||||| | || |||||||| Sbjct 310 CGTGAAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTG 369 Query 281801 ACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGAC 281860 ||||| ||||| || |||| | ||| ||| || || | ||||| || ||| || Sbjct 370 ACCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCAC 429 Query 281861 GATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACC 281920 ||| || ||| || || ||| ||||| || || ||||| | || || || || || Sbjct 430 GATGGTGCCCATGAGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCC 489 Query 281921 ACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAA 281965 | ||| || ||||| | ||| ||| |||||| ||||| Sbjct 490 CGCCAGCTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGAA 534 >seq3504 Length=1219 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 || || | ||||| |||||||||||||||||||| || || |||| || |||||||||| Sbjct 1096 AATCGGTAGCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 1155 Query 165762 GTTCGAGCCCCAC 165774 ||||||||||||| Sbjct 1156 GTTCGAGCCCCAC 1168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057747206605580