Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2296 324 2e-83 seq1417 93.3 5e-14 >seq2296 Length=1937 Score = 324 bits (358), Expect = 2e-83 Identities = 487/682 (71%), Gaps = 10/682 (1%) Strand=Plus/Plus Query 145672 AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGG 145731 ||||| ||| |||||||| ||||||||| ||||||||| ||||| || |||||||| Sbjct 93 AGCTGTTCCTTGAGGGGCTCGACGTGGTTGGCGTAGACGTGGGCGTCGCCGAGGACGTGA 152 Query 145732 ATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAG 145791 | || ||||| || |||||| || ||||||| |||| ||| || |||| |||| Sbjct 153 AAAAACTCCCCTGGGCGGAGGCCGCAGACCTGGGCGAGCATGCGGGTGAGGAGGGCGTAG 212 Query 145792 CTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 || |||||||||||||| ||||| || | ||| ||||||||||||||| |||| Sbjct 213 GAAGCGATGTTGAAGGGCACGCCCAGGCCGAGGTCTGCCGAGCGCTGGTACATGGAGCAG 272 Query 145852 GAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCA-T 145910 |||||||| || | |||||| |||||||| || | |||||||||||||||||||| | Sbjct 273 GAGAGCTCTCCCCGGGCCACGAAGAACTGGGCGAGCACGTGGCAGGGCGGCAGGGCCATT 332 Query 145911 GGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTC-GGGGTTCC 145969 ||||| | | | | |||||||||||| ||| | || | || | || | |||||| Sbjct 333 TGCGGG-ATGGCGGTGGGGTTCCAGGCGCAGAGCAGCAGGCGCC-GGTCGCAGGGGTTGG 390 Query 145970 TCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCT 146029 ||||||| | ||||| | |||||||||||||||||| || || | | Sbjct 391 TCTTGATGCGGTGGACTAGGTCGGCAACCTGGTCCACGCCCTGCCCGGCATAGTC-GGCG 449 Query 146030 TGGA-GTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGG 146088 || | ||| |||| ||||| || ||||| | |||||| || ||||| |||||||||| | Sbjct 450 TGCATGTCGGCGTAGGCGGCGCCAAAGTGGCGCCACTGAAAGCCGTACACGGGCCCCAAG 509 Query 146089 TCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCG 146148 || || ||| | |||| ||| || | | | || || | ||||| |||||| || Sbjct 510 TCGCCCTCCTCGCGGTGCTGCAGGCCCAGCGAGTCCAGAAAAGCGCGGGATCCGTTGCCG 569 Query 146149 TCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAAC 146208 ||||| || |||||| | || ||| |||| ||| ||||| ||| | |||| Sbjct 570 TCCCAAATGCCCACGCCCTTGGCCTTGAGTCTGTTGGCGTCGGTGGAGCCCGCCAGGAAC 629 Query 146209 CAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 |||||||||||||| | || || | |||||| || | ||||||||| ||||| || || Sbjct 630 CAGAGCAGCTCTTCCACCACGCCGCGCCAGAACACGCGCTTGGTGGTAAGCAGCGGAAAG 689 Query 146269 TGGCCCCGCAGGGAGTACTTGGCCTGGTCC--CCGAAGACGGACAGGGTGCCCACGCCCG 146326 | ||||||| | | || |||| | || || || | ||| || ||| ||| | Sbjct 690 CTGTGCCGCAGGTTGAA--GCGCATGGTGCGACCAAACACCGCCAGCGTTCCCGTGCCGG 747 Query 146327 TCCTGTCCCCCCTGCGCACCCC 146348 ||| || |||| | |||| || Sbjct 748 TCCGATCTCCCCGGGGCACGCC 769 >seq1417 Length=2795 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 36753 CGCGGACGCGGAGGGCTACCAGGGGGCCACGGTCATAGACCCCTCGCCCGGGTTCTACAA 36812 ||||| || ||||||||| |||| ||||| || | || ||| | |||| | |||| Sbjct 2556 CGCGGGCGGCGAGGGCTACGAGGGCGCCACCGTGCTCGAGCCCAAGGCCGGCTACTACGC 2615 Query 36813 CAC-CCCGGTGCTGGTGGTGGACTTTGCCAGCCTGTACCCCACCATCATCCAGGCCCACA 36871 ||| |||| ||| | |||||||||| |||||||| ||||||| |||||||| Sbjct 2616 CACGCCCGTTGCCAC-GCTGGACTTTGCTTCGCTGTACCCGTCCATCATGATGGCCCACA 2674 Query 36872 ACCTCTGCTACTCCACCATGATCCCCGGAGACAGGCTG 36909 ||||||||||| ||||| || | ||| ||| | |||| Sbjct 2675 ACCTCTGCTACACCACCCTGGTGCCCCGAGCCGCGCTG 2712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590035007810640