Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq2296 324 2e-83
seq1417 93.3 5e-14
>seq2296
Length=1937
Score = 324 bits (358), Expect = 2e-83
Identities = 487/682 (71%), Gaps = 10/682 (1%)
Strand=Plus/Plus
Query 145672 AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGG 145731
||||| ||| |||||||| ||||||||| ||||||||| ||||| || ||||||||
Sbjct 93 AGCTGTTCCTTGAGGGGCTCGACGTGGTTGGCGTAGACGTGGGCGTCGCCGAGGACGTGA 152
Query 145732 ATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAG 145791
| || ||||| || |||||| || ||||||| |||| ||| || |||| ||||
Sbjct 153 AAAAACTCCCCTGGGCGGAGGCCGCAGACCTGGGCGAGCATGCGGGTGAGGAGGGCGTAG 212
Query 145792 CTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851
|| |||||||||||||| ||||| || | ||| ||||||||||||||| ||||
Sbjct 213 GAAGCGATGTTGAAGGGCACGCCCAGGCCGAGGTCTGCCGAGCGCTGGTACATGGAGCAG 272
Query 145852 GAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCA-T 145910
|||||||| || | |||||| |||||||| || | |||||||||||||||||||| |
Sbjct 273 GAGAGCTCTCCCCGGGCCACGAAGAACTGGGCGAGCACGTGGCAGGGCGGCAGGGCCATT 332
Query 145911 GGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTC-GGGGTTCC 145969
||||| | | | | |||||||||||| ||| | || | || | || | ||||||
Sbjct 333 TGCGGG-ATGGCGGTGGGGTTCCAGGCGCAGAGCAGCAGGCGCC-GGTCGCAGGGGTTGG 390
Query 145970 TCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCT 146029
||||||| | ||||| | |||||||||||||||||| || || | |
Sbjct 391 TCTTGATGCGGTGGACTAGGTCGGCAACCTGGTCCACGCCCTGCCCGGCATAGTC-GGCG 449
Query 146030 TGGA-GTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGG 146088
|| | ||| |||| ||||| || ||||| | |||||| || ||||| |||||||||| |
Sbjct 450 TGCATGTCGGCGTAGGCGGCGCCAAAGTGGCGCCACTGAAAGCCGTACACGGGCCCCAAG 509
Query 146089 TCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCG 146148
|| || ||| | |||| ||| || | | | || || | ||||| |||||| ||
Sbjct 510 TCGCCCTCCTCGCGGTGCTGCAGGCCCAGCGAGTCCAGAAAAGCGCGGGATCCGTTGCCG 569
Query 146149 TCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAAC 146208
||||| || |||||| | || ||| |||| ||| ||||| ||| | ||||
Sbjct 570 TCCCAAATGCCCACGCCCTTGGCCTTGAGTCTGTTGGCGTCGGTGGAGCCCGCCAGGAAC 629
Query 146209 CAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 146268
|||||||||||||| | || || | |||||| || | ||||||||| ||||| || ||
Sbjct 630 CAGAGCAGCTCTTCCACCACGCCGCGCCAGAACACGCGCTTGGTGGTAAGCAGCGGAAAG 689
Query 146269 TGGCCCCGCAGGGAGTACTTGGCCTGGTCC--CCGAAGACGGACAGGGTGCCCACGCCCG 146326
| ||||||| | | || |||| | || || || | ||| || ||| ||| |
Sbjct 690 CTGTGCCGCAGGTTGAA--GCGCATGGTGCGACCAAACACCGCCAGCGTTCCCGTGCCGG 747
Query 146327 TCCTGTCCCCCCTGCGCACCCC 146348
||| || |||| | |||| ||
Sbjct 748 TCCGATCTCCCCGGGGCACGCC 769
>seq1417
Length=2795
Score = 93.3 bits (102), Expect = 5e-14
Identities = 117/158 (74%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 36753 CGCGGACGCGGAGGGCTACCAGGGGGCCACGGTCATAGACCCCTCGCCCGGGTTCTACAA 36812
||||| || ||||||||| |||| ||||| || | || ||| | |||| | ||||
Sbjct 2556 CGCGGGCGGCGAGGGCTACGAGGGCGCCACCGTGCTCGAGCCCAAGGCCGGCTACTACGC 2615
Query 36813 CAC-CCCGGTGCTGGTGGTGGACTTTGCCAGCCTGTACCCCACCATCATCCAGGCCCACA 36871
||| |||| ||| | |||||||||| |||||||| ||||||| ||||||||
Sbjct 2616 CACGCCCGTTGCCAC-GCTGGACTTTGCTTCGCTGTACCCGTCCATCATGATGGCCCACA 2674
Query 36872 ACCTCTGCTACTCCACCATGATCCCCGGAGACAGGCTG 36909
||||||||||| ||||| || | ||| ||| | ||||
Sbjct 2675 ACCTCTGCTACACCACCCTGGTGCCCCGAGCCGCGCTG 2712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590035007810640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |