Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq60 194 2e-44
seq2724 149 6e-31
seq55 134 1e-26
seq3257 116 4e-21
seq2314 114 1e-20
>seq60
Length=8765
Score = 194 bits (214), Expect = 2e-44
Identities = 337/482 (70%), Gaps = 15/482 (3%)
Strand=Plus/Plus
Query 116954 GCCATCGAGACGATGCC-GTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC 117012
|||| ||||||| | || ||| || || |||||||||| ||||| ||||||||||||
Sbjct 2522 GCCACCGAGACGGTACCCGTG-GTGAAGAAGAAGGCCGACTGGGCTCTGCGCTGGATCAA 2580
Query 117013 CGGCA--GAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070
|||| ||||| ||| | |||||||||||||| || ||| ||| |||||| |
Sbjct 2581 CGGCTCGGAGAG-----CTTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATT 2635
Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130
||||| ||||| ||| | |||| | ||| ||||||| ||||| ||||||||||||
Sbjct 2636 TTCTTCAGCGGCAGCTTCTGCTCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGC 2695
Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190
|| || || ||||||||||||||| | || ||||| ||||| ||||||||||||
Sbjct 2696 CTCACCTTTTCCAACGAGCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCTGC 2755
Query 117191 TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCG-CGGCGCGCGTC--AGGGAGATCGTC 117247
|||| | | || || | ||| ||| || | || ||||| | || ||||
Sbjct 2756 CTGCTCTAC-TCCA--TGCTCGAGCACCCGCTCGCCATCGAGCGTCTGAACCAGCTCGTG 2812
Query 117248 ACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTG 117307
||| || || | |||||| || || || ||| || ||||||||| ||| |
Sbjct 2813 GGCGAGGCCGTGGAAATCGAGAAGGAGTTTGTCTGCGATGCCCTGCCGGTGGATCTCATC 2872
Query 117308 GGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTC 117367
|| | || || | |||| || ||||| ||||| || |||| ||||||| ||
Sbjct 2873 GGCATGAACGGCAAGCTGATGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGCTCGTC 2932
Query 117368 GAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATC 117427
| |||| | |||||| ||||||| | |||| ||| | |||| ||| | ||||||
Sbjct 2933 GCCCTGGGTGCGCCCAAGCTCTACAACGCCACCAATCCGTTCGACTGGATGGAGCTCATC 2992
Query 117428 TC 117429
||
Sbjct 2993 TC 2994
Score = 111 bits (122), Expect = 2e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 116680 CGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCG 116739
|||||||||||| ||| | |||| | ||||||||| | || | |||||||||
Sbjct 2127 CGAGGAGGTGGATCTGGGTAGCGACATGCAGGACTGGGAGAAGCTCAATGGCAACGAGCG 2186
Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799
||| |||||| ||| | || || || || || | | ||| ||||||||| |||||
Sbjct 2187 CCACTTCATCTCCCACATCCTCGCTTTCTTTGCTGGCTCCGATGGCATCGTCCTGGAGAA 2246
Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859
|||| || |||||| | |||||| || ||||||| || ||| ||||| ||
Sbjct 2247 CCTGGGCGTGCGTTTTATGAAAGAGGTGACCGTTCCCGAGGCCCGTGCCTTTTACGGGTT 2306
Query 116860 TCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895
||||| ||||| |||||| | ||||| || |||||
Sbjct 2307 CCAGATTGCCATCGAGAACATCCACTCTGAGATGTA 2342
>seq2724
Length=1646
Score = 149 bits (164), Expect = 6e-31
Identities = 172/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||||| |||||||| ||||||||| |||| || || | |
Sbjct 1535 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCG 1476
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| |||||||| || | |||||
Sbjct 1475 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 1417
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | ||||||||| |||||||| || | ||||| || |||||||||
Sbjct 1416 GCAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 1357
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| | || || ||||| || | || || | ||||||
Sbjct 1356 CATCCAGAAGGAGTCTACCCTTCATCTGGTCCTCCGTCTGCGCGGCGGC 1308
>seq55
Length=8980
Score = 134 bits (148), Expect = 1e-26
Identities = 121/152 (80%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || |||| ||||| |||||||||||| | |||||||| || || |||| ||
Sbjct 4162 TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCG 4103
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
| ||||| |||||||| |||| |||||||| |||||||||||||||||||||| |||
Sbjct 4102 CCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCA 4043
Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
| || || || || | ||| || | ||||||
Sbjct 4042 CCCTCCACCTGGTCCTCCGCCTGCGCGGCGGC 4011
>seq3257
Length=1341
Score = 116 bits (128), Expect = 4e-21
Identities = 137/183 (75%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAAGGAAAA 40775
||||| ||||||||| |||| || || | | |||| | | ||||| |||||| ||
Sbjct 185 GGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATTGAAAACG-TCAAGGCCAA 127
Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835
|| | ||||| |||||||| || | |||||||| || || || | ||||||||| ||
Sbjct 126 GATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCGGGCAAGCA 67
Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895
|||||| || | ||||| || |||||||||||||||||||||| | || || || ||
Sbjct 66 GCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCACCT 7
Query 40896 AGT 40898
||
Sbjct 6 GGT 4
>seq2314
Length=1923
Score = 114 bits (126), Expect = 1e-20
Identities = 129/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 117023 GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGC 117082
||| |||| | |||||||| |||| || ||| ||| |||||| || ||| |||
Sbjct 1846 GCCTCCTTTGCGCAGCGCCTGCTGGCGTTTGCGTGCGTGGAGGGCATCCACTTCAGCGGC 1787
Query 117083 AGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGC 117142
||| |||||| | |||||||| || |||||||||||||| || || || || |
Sbjct 1786 GCCTTCTGCGCCATCTACTGGCTCAAAAAGCGCGGCCTCATGCCGGGGCTCACCTTTTCC 1727
Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195
||||||||||| || |||||||||| ||||| |||||||||||| ||||
Sbjct 1726 AACGAGCTCATTTCTCGGGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCT 1674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515182709600160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |