Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq60 194 2e-44 seq2724 149 6e-31 seq55 134 1e-26 seq3257 116 4e-21 seq2314 114 1e-20 >seq60 Length=8765 Score = 194 bits (214), Expect = 2e-44 Identities = 337/482 (70%), Gaps = 15/482 (3%) Strand=Plus/Plus Query 116954 GCCATCGAGACGATGCC-GTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC 117012 |||| ||||||| | || ||| || || |||||||||| ||||| |||||||||||| Sbjct 2522 GCCACCGAGACGGTACCCGTG-GTGAAGAAGAAGGCCGACTGGGCTCTGCGCTGGATCAA 2580 Query 117013 CGGCA--GAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 |||| ||||| ||| | |||||||||||||| || ||| ||| |||||| | Sbjct 2581 CGGCTCGGAGAG-----CTTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATT 2635 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 ||||| ||||| ||| | |||| | ||| ||||||| ||||| |||||||||||| Sbjct 2636 TTCTTCAGCGGCAGCTTCTGCTCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGC 2695 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 || || || ||||||||||||||| | || ||||| ||||| |||||||||||| Sbjct 2696 CTCACCTTTTCCAACGAGCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCTGC 2755 Query 117191 TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCG-CGGCGCGCGTC--AGGGAGATCGTC 117247 |||| | | || || | ||| ||| || | || ||||| | || |||| Sbjct 2756 CTGCTCTAC-TCCA--TGCTCGAGCACCCGCTCGCCATCGAGCGTCTGAACCAGCTCGTG 2812 Query 117248 ACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTG 117307 ||| || || | |||||| || || || ||| || ||||||||| ||| | Sbjct 2813 GGCGAGGCCGTGGAAATCGAGAAGGAGTTTGTCTGCGATGCCCTGCCGGTGGATCTCATC 2872 Query 117308 GGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTC 117367 || | || || | |||| || ||||| ||||| || |||| ||||||| || Sbjct 2873 GGCATGAACGGCAAGCTGATGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGCTCGTC 2932 Query 117368 GAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATC 117427 | |||| | |||||| ||||||| | |||| ||| | |||| ||| | |||||| Sbjct 2933 GCCCTGGGTGCGCCCAAGCTCTACAACGCCACCAATCCGTTCGACTGGATGGAGCTCATC 2992 Query 117428 TC 117429 || Sbjct 2993 TC 2994 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 116680 CGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCG 116739 |||||||||||| ||| | |||| | ||||||||| | || | ||||||||| Sbjct 2127 CGAGGAGGTGGATCTGGGTAGCGACATGCAGGACTGGGAGAAGCTCAATGGCAACGAGCG 2186 Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799 ||| |||||| ||| | || || || || || | | ||| ||||||||| ||||| Sbjct 2187 CCACTTCATCTCCCACATCCTCGCTTTCTTTGCTGGCTCCGATGGCATCGTCCTGGAGAA 2246 Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859 |||| || |||||| | |||||| || ||||||| || ||| ||||| || Sbjct 2247 CCTGGGCGTGCGTTTTATGAAAGAGGTGACCGTTCCCGAGGCCCGTGCCTTTTACGGGTT 2306 Query 116860 TCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 ||||| ||||| |||||| | ||||| || ||||| Sbjct 2307 CCAGATTGCCATCGAGAACATCCACTCTGAGATGTA 2342 >seq2724 Length=1646 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| ||||||||| |||| || || | | Sbjct 1535 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCG 1476 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||| || | ||||| Sbjct 1475 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 1417 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||||||||| |||||||| || | ||||| || ||||||||| Sbjct 1416 GCAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 1357 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || || ||||| || | || || | |||||| Sbjct 1356 CATCCAGAAGGAGTCTACCCTTCATCTGGTCCTCCGTCTGCGCGGCGGC 1308 >seq55 Length=8980 Score = 134 bits (148), Expect = 1e-26 Identities = 121/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || |||| ||||| |||||||||||| | |||||||| || || |||| || Sbjct 4162 TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCG 4103 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| |||||||| |||| |||||||| |||||||||||||||||||||| ||| Sbjct 4102 CCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCA 4043 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | || || || || | ||| || | |||||| Sbjct 4042 CCCTCCACCTGGTCCTCCGCCTGCGCGGCGGC 4011 >seq3257 Length=1341 Score = 116 bits (128), Expect = 4e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAAGGAAAA 40775 ||||| ||||||||| |||| || || | | |||| | | ||||| |||||| || Sbjct 185 GGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATTGAAAACG-TCAAGGCCAA 127 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 || | ||||| |||||||| || | |||||||| || || || | ||||||||| || Sbjct 126 GATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCGGGCAAGCA 67 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||| || | ||||| || |||||||||||||||||||||| | || || || || Sbjct 66 GCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCACCT 7 Query 40896 AGT 40898 || Sbjct 6 GGT 4 >seq2314 Length=1923 Score = 114 bits (126), Expect = 1e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 117023 GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGC 117082 ||| |||| | |||||||| |||| || ||| ||| |||||| || ||| ||| Sbjct 1846 GCCTCCTTTGCGCAGCGCCTGCTGGCGTTTGCGTGCGTGGAGGGCATCCACTTCAGCGGC 1787 Query 117083 AGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGC 117142 ||| |||||| | |||||||| || |||||||||||||| || || || || | Sbjct 1786 GCCTTCTGCGCCATCTACTGGCTCAAAAAGCGCGGCCTCATGCCGGGGCTCACCTTTTCC 1727 Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 ||||||||||| || |||||||||| ||||| |||||||||||| |||| Sbjct 1726 AACGAGCTCATTTCTCGGGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCT 1674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515182709600160