Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq2724 132 4e-26
seq3257 107 2e-18
seq55 87.8 2e-12
seq114 86.0 5e-12
>seq2724
Length=1646
Score = 132 bits (146), Expect = 4e-26
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| || || |||||||| ||| || |||||| |||||| ||||| || ||
Sbjct 1339 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCC 1398
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || || |||||||| |||||||| |||||||||||||| || || ||
Sbjct 1399 GCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1458
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| |||||||| ||| ||||||| ||| | || ||||| ||||| ||
Sbjct 1459 ACGTTCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGCGTC 1518
Query 118722 TTTACAAAAATCTGCATG 118739
|| || || |||||||||
Sbjct 1519 TTGACGAAGATCTGCATG 1536
>seq3257
Length=1341
Score = 107 bits (118), Expect = 2e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | |||||||| || || |||||||| ||| || |||||| ||||||
Sbjct 4 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 63
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || ||| | || || |||||||| |||||||| ||||||||||||||
Sbjct 64 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGG 123
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | ||| | ||||||| ||| ||||||| ||| | || |||
Sbjct 124 ATCTTGGCCTTGACGTTTTCAATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTG 183
Query 118710 CC 118711
||
Sbjct 184 CC 185
>seq55
Length=8980
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || ||||| || || |||||||| ||| || ||||| |||||
Sbjct 4030 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCC 4089
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||||| || || ||| |||| || |||||||| || || || ||||||||||||||
Sbjct 4090 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4145
>seq114
Length=7431
Score = 86.0 bits (94), Expect = 5e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 133814 GGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAG 133873
||| || || || ||||||||||||| | | |||| ||||||||||| ||| ||
Sbjct 846 GGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCGGTGCACAG 905
Query 133874 GTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTT 133933
||||||||| ||||| ||||||| || | || ||||| | ||||| |||||
Sbjct 906 GTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAGGCGTCCTT 965
Query 133934 GTATAGCATGTACGGCCCGCCGGTTTC 133960
||| |||||||| ||| ||| || ||
Sbjct 966 GTACAGCATGTAGGGCGTGCCCGTCTC 992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433800442112872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |