Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq2724 125 5e-24
seq55 102 5e-17
seq3257 98.7 6e-16
>seq2724
Length=1646
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||||||||| | || ||||| || | ||| || ||||| |||||||||||||||
Sbjct 1309 CCGCCGCGCAGACGGAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1368
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| ||||||||| |||||||| || |||||||||||| ||
Sbjct 1369 AGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGA 1428
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | | | || | || | || || ||
Sbjct 1429 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCACC 1488
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| ||||| || || || || || |||||||||||
Sbjct 1489 TCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 1535
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| ||||| | || |||||||| | ||| || ||||| |||||||||||||||
Sbjct 1537 CCGCCACGCAGACGGAGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1596
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTG 34272
|| ||| | || |||| ||||||||| |||||||| || ||||||||
Sbjct 1597 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTG 1646
>seq55
Length=8980
Score = 102 bits (112), Expect = 5e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||||||||| | || |||||||| | || || ||||| ||||||||||||| |
Sbjct 4012 CCGCCGCGCAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 4071
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| |||| ||||||||| ||||| || || ||||||||||| |||
Sbjct 4072 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 4131
Query 34283 ACGCTCTCCTTGTC 34296
| || |||||||||
Sbjct 4132 ATGCCCTCCTTGTC 4145
>seq3257
Length=1341
Score = 98.7 bits (108), Expect = 6e-16
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | ||| || ||||| ||||||||||||||||| ||| | ||
Sbjct 1 AGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 60
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| ||||||||| |||||||| || |||||||||||| || | || |||||||||
Sbjct 61 TCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323049690464960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |