Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq114 170 4e-37 >seq114 Length=7431 Score = 170 bits (188), Expect = 4e-37 Identities = 402/603 (67%), Gaps = 13/603 (2%) Strand=Plus/Minus Query 248839 ACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCAC 248898 || |||||| ||||| || ||| | | |||||| | ||||| || |||||| Sbjct 1739 ACCCTGGAGCGCTCGTACCTGCTCCGCGTGAACGGCAAGGTGGTGGAGCGTCCGCAGCAC 1680 Query 248899 ATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACG 248958 ||| ||||||| ||| | | || || |||||||| ||| | ||| | | |||||||| Sbjct 1679 ATGCTGATGCGCGTGTCGATGGGCATCCACAAGGAGGACGTGGAGTCGGCGATCGAGACG 1620 Query 248959 TAC-ACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGG 249017 ||| ||| | |||| | || ||| | || || || | ||||||||||||||||| || Sbjct 1619 TACCACCTGC-TGAGCCAGCGTTGGTTCACGCACGCGTCGCCGACGCTCTTCAACGCGGG 1561 Query 249018 TACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGA 249077 ||| | | ||||||||| |||||| | | |||||| | | |||| |||| Sbjct 1560 CACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCCATGAAGGGCGACAGCATCGA 1501 Query 249078 CGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGG 249137 ||||| || |||||||| || || ||| || || ||||||||| ||||| Sbjct 1500 GGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGCAAGAGCGCGGGCGGCATCGG 1441 Query 249138 TCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAG 249197 || | | | ||||||| || | ||| ||||||||| || || || || || Sbjct 1440 GCTGCACATGCACGACATCCGCGCCACGGGGTCGTACATCCGGGGCACCAACGGCACGAG 1381 Query 249198 TGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGC 249257 | || | || ||| | || || || | ||| || ||| | | |||||| Sbjct 1380 CAACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACGGCTCGGTACGTGGACCAGGG 1321 Query 249258 CGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATT 249314 ||| || || ||||| | || || |||| |||| |||||||| || | | Sbjct 1320 CGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAGCCCTGGCACGCGGACGTGAT 1261 Query 249315 GGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGA----GCTCATGAGAGCGCGTGACC 249370 ||| | |||||| || |||||| ||||||| || |||| | || || |||| Sbjct 1260 GGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCTC----GCGCCCGCGACC 1205 Query 249371 TCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATT 249430 | |||||||| |||||| || ||||| |||| ||| |||||| |||| ||||| | | Sbjct 1204 TGTTCTACGGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTCGAGGCGGACGGGCAGT 1145 Query 249431 GGA 249433 ||| Sbjct 1144 GGA 1142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073688449257088