Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq114 329 3e-85
seq60 140 3e-28
seq2724 123 2e-23
seq3257 95.1 1e-14
>seq114
Length=7431
Score = 329 bits (364), Expect = 3e-85
Identities = 594/863 (69%), Gaps = 4/863 (0%)
Strand=Plus/Plus
Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080
||||||||||| || ||||| |||||| |||||| || ||||||||| || || |||
Sbjct 838 GCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCG 897
Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140
|| || || ||||| ||||| |||||||||| || ||||||||| || |||||
Sbjct 898 GTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAG 957
Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200
| |||||||| |||||||| |||||||||||||| ||||| ||| | || || |
Sbjct 958 GCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAAC 1017
Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTA 23259
|||| ||| ||| | | |||| || | | ||| || ||||||| |||
Sbjct 1018 CACAGCTGCTGCGCGCGCAT-CGTCTTGCGCGCGCGGCCCTCGCGCTCGTACCGCGCGTA 1076
Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319
| || ||||| |||| || | ||| |||||||| |||| | | || || |
Sbjct 1077 GAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCAGAA 1136
Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379
|| |||||| ||| || ||||| ||||||| || || || ||||| || |
Sbjct 1137 CAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGCCC 1196
Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439
||||||||| ||||||||||| ||||||| |||||| |||||| || |||| |
Sbjct 1197 GTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAGCCA 1256
Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499
||||| ||||||||| ||||| ||||| ||||| || ||||| |||||| | |||
Sbjct 1257 GTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTTGCC 1316
Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559
||||||||| || ||||| || ||||||| |||| |||| | ||||| ||||| | ||
Sbjct 1317 GCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCACGCC 1376
Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619
|||| || |||| |||| | ||| || | || || | || ||| | |||
Sbjct 1377 GTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTCGTGCATGTG 1436
Query 23620 GAAACCTATGCCTCCGCCCGATTTCGAT-ATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678
| || ||||| || | || | | | | || |||||| | || || ||||||||||
Sbjct 1437 CAGCCCGATGCCGCC-CGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTGTCGTAGA 1495
Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738
|||||||||||||||| | || | || ||||| || || || |||| ||
Sbjct 1496 TGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCGGGCGGG 1555
Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798
| || | || ||| || ||||| |||||||| || | | | || || |
Sbjct 1556 GGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCTCAGCAGGT 1615
Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858
|||||| ||||| || | || | |||||| ||| || || || | ||||||||||
Sbjct 1616 GGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACACGCGCATCA 1675
Query 23859 TCATGTATTGAGGTCTCTCGACC 23881
||||| || || | ||| |||
Sbjct 1676 GCATGTGCTGCGGACGCTCCACC 1698
>seq60
Length=8765
Score = 140 bits (154), Expect = 3e-28
Identities = 320/474 (68%), Gaps = 16/474 (3%)
Strand=Plus/Plus
Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT- 58021
|| || ||| | || | ||||| || ||| || || || ||||| ||||||||
Sbjct 2594 TTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTTC 2653
Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081
||| || | | ||| | ||||| ||||| || ||||||||||| || ||| ||||||
Sbjct 2654 TGCTCCA-TCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCAACGA 2712
Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT 58141
| | || || || || ||||| || || || || ||||| ||||| | ||||| |||
Sbjct 2713 GCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTACTC---CAT 2769
Query 58142 TGTCAATAAACCGACGCGGGATCG--CATCTTGGACA--TTATCACCGAGGCGGTCGCGA 58197
|| | | ||| | || |||| | ||| || | | |||||| || | |
Sbjct 2770 GCTCGAGCACCCG-CTCGCCATCGAGCGTCTGAACCAGCTCGTGGGCGAGGCCGTGGAAA 2828
Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257
|||| || ||||||||| ||| ||||| ||||||| | |||| |||||| |
Sbjct 2829 TCGAGAAGGAGTTTGTCTGCGATGCCCTGCCGGTGGATCTCATCGGCATGAACGGCAAGC 2888
Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGC 58317
||||| |||||||||||||||| |||| | || | ||| ||| || | ||
Sbjct 2889 TGATGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGCTCGTCGCCCTG---GGTGCGC 2945
Query 58318 ---GTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCA 58374
| |||||| | | |||||||| || | ||| | || |||||||| ||||||
Sbjct 2946 CCAAGCTCTACAACGCCACCAATCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCA 3005
Query 58375 AGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGA 58428
|||| ||||||||||| || || | || || ||||| |||||| ||||
Sbjct 3006 AGACCAACTTTTTCGAGAAGCGCGTCGGAGACTACCAAAAGGCCGGCGTCATGA 3059
>seq2724
Length=1646
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || | ||
Sbjct 1536 CATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTC 1477
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || ||||||||| ||| | || ||||||||
Sbjct 1476 GGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 1417
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || ||||| ||||| ||| |||| || ||| || ||| || ||
Sbjct 1416 GCAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 1357
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || || ||||||||||| || | ||| | |||||
Sbjct 1356 CATCCAGAAGGAGTCTACCCTTCATCTGGTCCTCCGTCTGCGCGGCGG 1309
>seq3257
Length=1341
Score = 95.1 bits (104), Expect = 1e-14
Identities = 137/192 (71%), Gaps = 1/192 (1%)
Strand=Plus/Minus
Query 31213 TCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAA 31272
|||| ||||||| || |||||| |||| || || | || |||| | | |||| |||||
Sbjct 191 TCTG-CAGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATTGAAAACGTCAA 133
Query 31273 ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGG 31332
| || ||||||||| ||| | || |||||||||||||| || || ||||| ||
Sbjct 132 GGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCGGG 73
Query 31333 CAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCT 31392
||| ||| |||| || ||| || ||| || ||||| || || || || || ||
Sbjct 72 CAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCT 13
Query 31393 TCATCTGGTACT 31404
||| ||||| ||
Sbjct 12 TCACCTGGTCCT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445734828594720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |