Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq114 329 3e-85 seq60 140 3e-28 seq2724 123 2e-23 seq3257 95.1 1e-14 >seq114 Length=7431 Score = 329 bits (364), Expect = 3e-85 Identities = 594/863 (69%), Gaps = 4/863 (0%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||||||||| || ||||| |||||| |||||| || ||||||||| || || ||| Sbjct 838 GCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCG 897 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || ||||| ||||| |||||||||| || ||||||||| || ||||| Sbjct 898 GTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAG 957 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | |||||||| |||||||| |||||||||||||| ||||| ||| | || || | Sbjct 958 GCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAAC 1017 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTA 23259 |||| ||| ||| | | |||| || | | ||| || ||||||| ||| Sbjct 1018 CACAGCTGCTGCGCGCGCAT-CGTCTTGCGCGCGCGGCCCTCGCGCTCGTACCGCGCGTA 1076 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | || ||||| |||| || | ||| |||||||| |||| | | || || | Sbjct 1077 GAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCAGAA 1136 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 || |||||| ||| || ||||| ||||||| || || || ||||| || | Sbjct 1137 CAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGCCC 1196 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 ||||||||| ||||||||||| ||||||| |||||| |||||| || |||| | Sbjct 1197 GTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAGCCA 1256 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 ||||| ||||||||| ||||| ||||| ||||| || ||||| |||||| | ||| Sbjct 1257 GTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTTGCC 1316 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 ||||||||| || ||||| || ||||||| |||| |||| | ||||| ||||| | || Sbjct 1317 GCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCACGCC 1376 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 |||| || |||| |||| | ||| || | || || | || ||| | ||| Sbjct 1377 GTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTCGTGCATGTG 1436 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGAT-ATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | || ||||| || | || | | | | || |||||| | || || |||||||||| Sbjct 1437 CAGCCCGATGCCGCC-CGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTGTCGTAGA 1495 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 |||||||||||||||| | || | || ||||| || || || |||| || Sbjct 1496 TGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCGGGCGGG 1555 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798 | || | || ||| || ||||| |||||||| || | | | || || | Sbjct 1556 GGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCTCAGCAGGT 1615 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 |||||| ||||| || | || | |||||| ||| || || || | |||||||||| Sbjct 1616 GGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACACGCGCATCA 1675 Query 23859 TCATGTATTGAGGTCTCTCGACC 23881 ||||| || || | ||| ||| Sbjct 1676 GCATGTGCTGCGGACGCTCCACC 1698 >seq60 Length=8765 Score = 140 bits (154), Expect = 3e-28 Identities = 320/474 (68%), Gaps = 16/474 (3%) Strand=Plus/Plus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT- 58021 || || ||| | || | ||||| || ||| || || || ||||| |||||||| Sbjct 2594 TTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTTC 2653 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 ||| || | | ||| | ||||| ||||| || ||||||||||| || ||| |||||| Sbjct 2654 TGCTCCA-TCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCAACGA 2712 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT 58141 | | || || || || ||||| || || || || ||||| ||||| | ||||| ||| Sbjct 2713 GCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTACTC---CAT 2769 Query 58142 TGTCAATAAACCGACGCGGGATCG--CATCTTGGACA--TTATCACCGAGGCGGTCGCGA 58197 || | | ||| | || |||| | ||| || | | |||||| || | | Sbjct 2770 GCTCGAGCACCCG-CTCGCCATCGAGCGTCTGAACCAGCTCGTGGGCGAGGCCGTGGAAA 2828 Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257 |||| || ||||||||| ||| ||||| ||||||| | |||| |||||| | Sbjct 2829 TCGAGAAGGAGTTTGTCTGCGATGCCCTGCCGGTGGATCTCATCGGCATGAACGGCAAGC 2888 Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGC 58317 ||||| |||||||||||||||| |||| | || | ||| ||| || | || Sbjct 2889 TGATGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGCTCGTCGCCCTG---GGTGCGC 2945 Query 58318 ---GTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCA 58374 | |||||| | | |||||||| || | ||| | || |||||||| |||||| Sbjct 2946 CCAAGCTCTACAACGCCACCAATCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCA 3005 Query 58375 AGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGA 58428 |||| ||||||||||| || || | || || ||||| |||||| |||| Sbjct 3006 AGACCAACTTTTTCGAGAAGCGCGTCGGAGACTACCAAAAGGCCGGCGTCATGA 3059 >seq2724 Length=1646 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || | || Sbjct 1536 CATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTC 1477 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | || |||||||| Sbjct 1476 GGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 1417 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| ||||| ||| |||| || ||| || ||| || || Sbjct 1416 GCAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 1357 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || ||||||||||| || | ||| | ||||| Sbjct 1356 CATCCAGAAGGAGTCTACCCTTCATCTGGTCCTCCGTCTGCGCGGCGG 1309 >seq3257 Length=1341 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 31213 TCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAA 31272 |||| ||||||| || |||||| |||| || || | || |||| | | |||| ||||| Sbjct 191 TCTG-CAGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATTGAAAACGTCAA 133 Query 31273 ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGG 31332 | || ||||||||| ||| | || |||||||||||||| || || ||||| || Sbjct 132 GGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCGGG 73 Query 31333 CAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCT 31392 ||| ||| |||| || ||| || ||| || ||||| || || || || || || Sbjct 72 CAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCT 13 Query 31393 TCATCTGGTACT 31404 ||| ||||| || Sbjct 12 TCACCTGGTCCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445734828594720