Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq2296 242 3e-59
>seq2296
Length=1937
Score = 242 bits (268), Expect = 3e-59
Identities = 404/584 (69%), Gaps = 0/584 (0%)
Strand=Plus/Plus
Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984
||||| || ||||||||| ||| ||||||||||| || | | ||| | ||| || ||
Sbjct 105 AGGGGCTCGACGTGGTTGGCGTAGACGTGGGCGTCGCCGAGGACGTGAAAAAACTCCCCT 164
Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044
||| ||||| ||| || |||| || || |||||||||||| ||||||||
Sbjct 165 GGGCGGAGGCCGCAGACCTGGGCGAGCATGCGGGTGAGGAGGGCGTAGGAAGCGATGTTG 224
Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104
|| || || || ||||| | ||| || || | |||||||| |||||| ||||| |||
Sbjct 225 AAGGGCACGCCCAGGCCGAGGTCTGCCGAGCGCTGGTACATGGAGCAGGAGAGCTCTCCC 284
Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164
|| |||||| | ||||| | ||||| || || || || ||||| ||| || | |
Sbjct 285 CGGGCCACGAAGAACTGGGCGAGCACGTGGCAGGGCGGCAGGGCCATTTGCGGGATGGCG 344
Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCC 21224
| ||||||||| ||||| | | | |||||| ||| ||| | || || | |
Sbjct 345 GTGGGGTTCCAGGCGCAGAGCAGCAGGCGCCGGTCGCAGGGGTTGGTCTTGATGCGGTGG 404
Query 21225 ACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTAC 21284
|| | || | ||||||||| ||||| || | |||| ||||| | |||
Sbjct 405 ACTAGGTCGGCAACCTGGTCCACGCCCTGCCCGGCATAGTCGGCGTGCATGTCGGCGTAG 464
Query 21285 TCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGG 21344
| || ||||| || | |||||| || |||||||| ||||||| |||||||| ||||
Sbjct 465 GCGGCGCCAAAGTGGCGCCACTGAAAGCCGTACACGGGCCCCAAGTCGCCCTCCTCGCGG 524
Query 21345 TCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG 21404
| | | |||| ||| ||| ||| |||||||| |||| |||||||||| |||
Sbjct 525 TGCTGCAGGCCCAGCGAGTCCAGAAAAGCGCGGGATCCGTTGCCGTCCCAAATGCCCACG 584
Query 21405 CCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCC 21464
|| | | ||| | ||| ||||||||||||| | ||||| |||| ||| |||
Sbjct 585 CCCTTGGCCTTGAGTCTGTTGGCGTCGGTGGAGCCCGCCAGGAACCAGAGCAGCTCTTCC 644
Query 21465 ACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAA 21508
|| ||||| | ||| ||||| | |||||||| | ||| |||||
Sbjct 645 ACCACGCCGCGCCAGAACACGCGCTTGGTGGTAAGCAGCGGAAA 688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427746460195680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |