Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2296 242 3e-59 >seq2296 Length=1937 Score = 242 bits (268), Expect = 3e-59 Identities = 404/584 (69%), Gaps = 0/584 (0%) Strand=Plus/Plus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 ||||| || ||||||||| ||| ||||||||||| || | | ||| | ||| || || Sbjct 105 AGGGGCTCGACGTGGTTGGCGTAGACGTGGGCGTCGCCGAGGACGTGAAAAAACTCCCCT 164 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 ||| ||||| ||| || |||| || || |||||||||||| |||||||| Sbjct 165 GGGCGGAGGCCGCAGACCTGGGCGAGCATGCGGGTGAGGAGGGCGTAGGAAGCGATGTTG 224 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 || || || || ||||| | ||| || || | |||||||| |||||| ||||| ||| Sbjct 225 AAGGGCACGCCCAGGCCGAGGTCTGCCGAGCGCTGGTACATGGAGCAGGAGAGCTCTCCC 284 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 || |||||| | ||||| | ||||| || || || || ||||| ||| || | | Sbjct 285 CGGGCCACGAAGAACTGGGCGAGCACGTGGCAGGGCGGCAGGGCCATTTGCGGGATGGCG 344 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCC 21224 | ||||||||| ||||| | | | |||||| ||| ||| | || || | | Sbjct 345 GTGGGGTTCCAGGCGCAGAGCAGCAGGCGCCGGTCGCAGGGGTTGGTCTTGATGCGGTGG 404 Query 21225 ACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTAC 21284 || | || | ||||||||| ||||| || | |||| ||||| | ||| Sbjct 405 ACTAGGTCGGCAACCTGGTCCACGCCCTGCCCGGCATAGTCGGCGTGCATGTCGGCGTAG 464 Query 21285 TCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGG 21344 | || ||||| || | |||||| || |||||||| ||||||| |||||||| |||| Sbjct 465 GCGGCGCCAAAGTGGCGCCACTGAAAGCCGTACACGGGCCCCAAGTCGCCCTCCTCGCGG 524 Query 21345 TCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG 21404 | | | |||| ||| ||| ||| |||||||| |||| |||||||||| ||| Sbjct 525 TGCTGCAGGCCCAGCGAGTCCAGAAAAGCGCGGGATCCGTTGCCGTCCCAAATGCCCACG 584 Query 21405 CCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCC 21464 || | | ||| | ||| ||||||||||||| | ||||| |||| ||| ||| Sbjct 585 CCCTTGGCCTTGAGTCTGTTGGCGTCGGTGGAGCCCGCCAGGAACCAGAGCAGCTCTTCC 644 Query 21465 ACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAA 21508 || ||||| | ||| ||||| | |||||||| | ||| ||||| Sbjct 645 ACCACGCCGCGCCAGAACACGCGCTTGGTGGTAAGCAGCGGAAA 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427746460195680