Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq114 187 4e-42 seq60 127 3e-24 seq308 104 3e-17 >seq114 Length=7431 Score = 187 bits (206), Expect = 4e-42 Identities = 385/568 (68%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| || ||| | ||||| ||||| | ||| ||| | | | | || Sbjct 1394 ACCAACGGCACGAGCAACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACGGCTCGG 1335 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||| || || ||||| | || || ||| |||| || ||| Sbjct 1334 TACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAGCCCTGG 1275 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||||||||| | |||| | || ||||||| ||| ||| || ||||| || Sbjct 1274 CACGCGGACGTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCTCGC 1215 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 ||| | ||| |||| || | || ||| | || || |||| |||||||||||| | | Sbjct 1214 GCCCGCGACCTGTTCTACGGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTCGAGGCG 1155 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 | || | |||||||| | |||||| || | | || || ||| | || |||||| Sbjct 1154 GACGGGCAGTGGAGCCTGTTCTGCCCCAACGAGGCGCCGGGCCTGGCGGACGTGTGGGGC 1095 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTC 97166 ||||||||| | ||| || ||||||| |||||||| || | | | || | Sbjct 1094 CCCGAGTTTGAGTCGCTCTACGCGCGGTACGAGCGCGAGGGCCG---CGCGCG-CAAGAC 1039 Query 97167 GATGCACGAG----AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 ||||| || | | |||||| ||||| || ||| ||| ||||| || || || Sbjct 1038 GATGCGCGCGCAGCAGCTGTGGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCACGCC 979 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCG-CAACAGCAACCAACGCCACTTGGGCACCA 97281 ||||| || |||||||| || || | || ||| |||||||| | || ||||||| | Sbjct 978 CTACATGCTGTACAAGGACGCC-TGCAACGCCAAGAGCAACCAGCAGAACCTGGGCACGA 920 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 ||||| || ||| |||||||| || || || |||||| | | || ||||||||||| | Sbjct 919 TCAAGTGCAGCAACCTGTGCACCGAGATCGTCGAGTACACGGCCCCCGACGAGACGGCCG 860 Query 97342 TTTGCGTTCTGGCATCGGTCAATCTGCC 97369 | ||| || || ||| || ||||| Sbjct 859 TGTGCAACCTCGCCTCGATCGCGCTGCC 832 >seq60 Length=8765 Score = 127 bits (140), Expect = 3e-24 Identities = 302/449 (67%), Gaps = 13/449 (3%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTT 125485 |||||||| || || ||| |||||||| ||||| || || || ||| |||||| Sbjct 2606 CTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTTCTGCT-CCATCTA 2664 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||| ||||||||||||| ||||||||||| || || |||||| | || ||||| Sbjct 2665 CTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCAACGAGCTCATCTCTCG 2724 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGA 125605 || |||||||| ||| ||||||||| || || | | | | || |||| Sbjct 2725 TGATGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTA-CTCCATGCTCGAGCACCCGC 2783 Query 125606 GTGCAGATCCAGCGA-TGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 || ||| |||| |||| || | | || ||| |||||| || || Sbjct 2784 TCGCC-ATCGAGCGTCTGAAC-------CAGC-TCGTGGGCGAGGCCGTGGAAATCGAGA 2834 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 | |||||| | ||| |||| ||||| | || ||||||||| ||||||| ||| Sbjct 2835 AGGAGTTTGTCTGCGATGCCCTGCCGGTGGATCTCATCGGCATGAACGGCAAGCTGATGA 2894 Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTT 125784 || ||||||| ||||||||| || || || || || || || | |||| | | Sbjct 2895 GCCAGTACATTGAGTTTGTGAGCGACCGGCTGCTCGTCGCCCTGGGTGCGCCCAAGCTCT 2954 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 ||||||||| ||||| || || | ||| ||| || || |||| |||||||||| Sbjct 2955 ACAACGCCACCAATCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACT 3014 Query 125845 TTTTCGAGAAGAAGGTCAGCGAGTACAAA 125873 ||||||||||| ||| | || ||| || Sbjct 3015 TTTTCGAGAAGCGCGTCGGAGACTACCAA 3043 >seq308 Length=5786 Score = 104 bits (114), Expect = 3e-17 Identities = 184/262 (70%), Gaps = 10/262 (4%) Strand=Plus/Minus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||||||||||||||| |||| || || || || |||||||| | | ||||||| || Sbjct 4402 CCGTGCGTCAGGTGGCCGCCGTGCGGGAGGTCCAGGCCCATGATGCGATCGTGCGGGTTG 4343 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | | || ||||| ||||||||||||||| ||||| ||||| || || || || Sbjct 4342 AGCAGGCCGGTGTAGACGGCAAAGTTGGCCGGAGAGCCAGAGTAGGGCTGCACGTTGACG 4283 Query 127567 CCCCA---TTCGGACTC--GTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCA 127621 ||||| ||||| ||| | |||| | ||| | | | || |||| ||| || | Sbjct 4282 CCCCACTCTTCGGGCTCCAGACCAAA--CACCGC-CAG-GGCA-CGCTTCTGGCACAGGA 4228 Query 127622 GTTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCG 127681 | || | ||||| | |||||| || |||||||| || ||||| |||||| Sbjct 4227 GCTCCACCTTGTCGATCACCTCGTTGCCGCCATAGTAGCGAGCCCCGGGGTAACCCTCGC 4168 Query 127682 AGTACTTGTTGATGAGACACGA 127703 |||||||||| | || ||||| Sbjct 4167 TGTACTTGTTGGTCAGGCACGA 4146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741006714482160