Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2724 84.2 2e-11 >seq2724 Length=1646 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| | | || | |||||| || |||||| || |||||||| || | | Sbjct 1309 CCGCCGCGCAGACGGAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1368 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || || | |||||||||||||| || || |||| | |||||||| || || Sbjct 1369 AGAGTGCGGC-CATCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGG 1427 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || || ||||| | | ||||| || | ||||||| Sbjct 1428 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCAC 1487 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || || || || || || || || |||||||| Sbjct 1488 CTCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 1535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421222110761666