Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq114 250 6e-61 >seq114 Length=7431 Score = 250 bits (276), Expect = 6e-61 Identities = 580/869 (67%), Gaps = 4/869 (0%) Strand=Plus/Minus Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 || || || |||||||| ||| | ||||| || | || || ||||| ||| || Sbjct 1697 GTGGAGCGTCCGCAGCACATGCTGATGCGCGTGTCGATGGGCATCCACAAGGAGGACGTG 1638 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCA 363564 || | ||||| || || || | || || || ||| ||||||||||| |||| Sbjct 1637 GAGTCGGCGATCGAGACGTACCACCTGCTGAGCCAGCGTTGGTTCACGCACGCGTCGCCG 1578 Query 363565 ACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATG 363624 || | | ||| || || || | || ||| || |||||| | | ||| Sbjct 1577 ACGCTCTTCAACGCGGGCACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCCATG 1518 Query 363625 AAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAG 363684 |||| ||| ||||||||| |||| ||||| || ||| | || || || |||| Sbjct 1517 AAGGGCGACAGCATCGAGGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGCAAG 1458 Query 363685 AATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCG 363743 | || ||||| || || | || ||| | | || || || | || |||| || Sbjct 1457 AGCGCGGGCGGCATCGGGCTGCACATGCACGACATCCGCGCCACGGGGTCGT-ACATCCG 1399 Query 363744 CGGCACAGGGGGATACTCGAATGGGC-TGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 ||||| || || | | ||| |||| |||||||| || ||||| || | || | Sbjct 1398 GGGCACCAACGGC-ACGAGCAACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACGG 1340 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 | ||||||| |||||||| || || |||||||| || || ||||| |||| || |||| Sbjct 1339 CTCGGTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAGC 1280 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 | || || || | | || | || || || || || ||| || || ||||| Sbjct 1279 CCTGGCACGCGGACGTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGG 1220 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982 || || || || |||||||| | || ||| | | |||| |||||||||||||| | Sbjct 1219 CTCGCGCCCGCGACCTGTTCTACGGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTCG 1160 Query 363983 AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 |||| | | | ||| || || ||||| |||| || || || | || || | Sbjct 1159 AGGCGGACGGGCAGTGGAGCCTGTTCTGCCCCAACGAGGCGCCGGGCCTGGCGGACGTGT 1100 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA 364102 |||| ||| | || | || |||| ||| || ||||| || || |||| Sbjct 1099 GGGGCCCCGAGTTTGAGTCGCTCTACGCGCGGTACGAGCGCGAGGGCCGCGCGCGCAAGA 1040 Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162 | || | ||| ||| |||| ||||| ||||| |||| |||||| ||||| || || | Sbjct 1039 CGATGCGCGCGCAGCAGCTGTGGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCACGC 980 Query 364163 CCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222 |||| ||| ||||||| || | |||||| |||| |||||||||| |||| || || | Sbjct 979 CCTACATGCTGTACAAGGACGCCTGCAACGCCAAGAGCAACCAGCAGAACCTGGGCACGA 920 Query 364223 TTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 | || |||||||| || |||||||| | || ||||| || ||||||||||| |||| Sbjct 919 TCAAGTGCAGCAACCTGTGCACCGAGATCGTCGAGTACACGGCCCCCGACGAGACGGCCG 860 Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCG 364311 | || ||||| || ||||||||||| ||| Sbjct 859 TGTGCAACCTCGCCTCGATCGCGCTGCCG 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303258982230812