Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq114 237 1e-57 seq60 156 4e-33 seq2724 129 6e-25 seq55 105 6e-18 seq3257 87.8 2e-12 >seq114 Length=7431 Score = 237 bits (262), Expect = 1e-57 Identities = 583/875 (67%), Gaps = 27/875 (3%) Strand=Plus/Plus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCG 145684 |||||||| || | || || || |||||||| |||| | | |||| | ||||||||| Sbjct 838 GCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCG 897 Query 145685 GCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCAC 145744 | ||||| ||||| || ||||| || ||||| || ||||| || || || |||||| Sbjct 898 GTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAG 957 Query 145745 GCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGG 145804 ||||||||||| |||||||| || ||| |||||| ||||| |||| |||| || Sbjct 958 GCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCC-----AAAATGG 1012 Query 145805 TG-----CAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCC 145859 | || | |||||| |||| | || | ||||||||| ||||| | Sbjct 1013 CGAACCACAGCTGCTGCGCGCGCATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACCGCG 1072 Query 145860 TGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGAC 145919 ||||||| ||||||| ||| || | || | |||||| || || |||||| | Sbjct 1073 CGTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGC 1132 Query 145920 ACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACA 145979 | | ||| ||| |||| || | |||||||| |||||||| || || | ||||| Sbjct 1133 AGAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACA 1192 Query 145980 GCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGC--ACCCATGTTTC--GCTTCAAA 146035 || |||| | || |||||| || || | |||| | || || ||| || || Sbjct 1193 GCCCGTAGAACAGGTCGCGGGC---GCGAGCCTCCTCCTTGCCGTGGTTCTTGC-GCAGG 1248 Query 146036 TTAAG-CACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTT 146094 | || || | || | |||||||||||| || || | || || || | ||| || || Sbjct 1249 TCCAGCCAGTCCAT-CACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTT 1307 Query 146095 TCGTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 || || ||| ||||||||||||| || || ||| ||| || ||||||| |||||| Sbjct 1308 GCGCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGG 1367 Query 146152 CTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCA 146211 | | |||||| || |||||| || || | || || ||| | | Sbjct 1368 CACCACGCCGTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTC 1427 Query 146212 ATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGT 146271 || | | || |||| ||||| || |||| || || ||||| || |||||| Sbjct 1428 GTGCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGT 1487 Query 146272 CTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATC 146329 ||||||||||| || ||||| ||| |||| ||| | | || |||||| || || | Sbjct 1488 GTCGTAGATGCCCTCGATGCTGTCGCCCTTC--ATGGCCACCAAAAAGCAGCTGCTCAGC 1545 Query 146330 TGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGG 146389 |||| || || ||||| ||| | |||||| ||||||||| ||| || Sbjct 1546 TGCGGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGG 1605 Query 146390 CTCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCG 146449 |||| || | ||||| ||||| || | | ||| || || ||||||| | Sbjct 1606 CTCAGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGAC 1665 Query 146450 ACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 |||||||| |||||||| || || |||||| |||| Sbjct 1666 ACGCGCATCAGCATGTGCTGCGGACGCTCCACCAC 1700 >seq60 Length=8765 Score = 156 bits (172), Expect = 4e-33 Identities = 343/505 (68%), Gaps = 22/505 (4%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| |||||||||| || ||||||||| || | | || || || ||||| Sbjct 2549 AAGAAGGCCGACTGGGCTCTGCGCTGGATCAACGGCT---CGGAGAGCTTTGCGGAGCGC 2605 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 ||||||| |||||| ||||||||| | || || ||||| || | |||||| Sbjct 2606 CTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTTCTGCTCCATCTAC 2665 Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277 | |||| || | || | ||||||||||||| || ||| ||||||||| || || || Sbjct 2666 TGGGTCAAGAAGCGCGGTC-TCATGCCCGGCCTCACCTTTTCCAACGAGCTCATCTCTCG 2724 Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAA 46337 || ||||||||||| || |||||||| || || || |||| | ||| || | Sbjct 2725 TGATGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCT-----ACTC-CATGCTCG---A 2775 Query 46338 GCTTGCGCCCGACACCGTG---CTGAGCATGTTCAAG---GAGGCGGTGGCCATTGAGAA 46391 || ||| || || || | |||| | | || | ||||| |||| || ||||| Sbjct 2776 GCACCCGCTCGCCATCGAGCGTCTGAACCAGCTCGTGGGCGAGGCCGTGGAAATCGAGAA 2835 Query 46392 GGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTG 46451 ||||||| | | || ||||| | | || | |||||||||| || ||| | Sbjct 2836 GGAGTTTGTCTGCGATGCCCTGCCGGTGGATCTCATCGGCATGAACGGCAAGCTGATGAG 2895 Query 46452 CGACTACATCGAGTTTGT-AGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATT 46510 | | ||||| |||||||| ||| ||||| |||||||| || ||| |||| | Sbjct 2896 CCAGTACATTGAGTTTGTGAGC-GACCGGCTGCTCGTCGCCCTGGGTGCGCCCAAGCTCT 2954 Query 46511 TTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATT 46570 |||| |||||| || || | ||| | |||||| ||| ||||||| || || | Sbjct 2955 ACAACGCCACCAATCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACT 3014 Query 46571 TTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||||| ||||||||||| || || Sbjct 3015 TTTTCGAGAAGCGCGTCGGAGACTA 3039 >seq2724 Length=1646 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||| || || | ||| | ||| |||||||| || |||||||| ||| Sbjct 1308 GCCGCCGCGCAGACGGAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1367 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| | || | ||||||||||| ||||| Sbjct 1368 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGG 1427 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | ||| | || || | ||||| | Sbjct 1428 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCAC 1487 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || || || || ||||| ||||||||| Sbjct 1488 CTCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 1536 >seq55 Length=8980 Score = 105 bits (116), Expect = 6e-18 Identities = 108/140 (77%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||| ||||||| || || || | || | ||| |||||||| || |||||||| Sbjct 4006 ATGATGCCGCCGCGCAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAG 4065 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||| || |||||| |||||| ||||||||||| ||| |||| | ||||||||||| Sbjct 4066 TCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 4125 Query 131122 GGAGGGATTCCTTCTTTGTC 131141 || ||||| || || ||||| Sbjct 4126 GGGGGGATGCCCTCCTTGTC 4145 >seq3257 Length=1341 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || |||||||| ||| || ||||| ||||| ||||||||||| Sbjct 15 GGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCC 74 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| | || | ||||||||||| ||||| || || || ||||| ||| || ||| Sbjct 75 CGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 134 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACC 131207 || | || | ||| || | ||||| | |||| ||| | ||| || || Sbjct 135 GACGTTTTCAATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCC 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471979369693440