Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq114 237 1e-57
seq60 156 4e-33
seq2724 129 6e-25
seq55 105 6e-18
seq3257 87.8 2e-12
>seq114
Length=7431
Score = 237 bits (262), Expect = 1e-57
Identities = 583/875 (67%), Gaps = 27/875 (3%)
Strand=Plus/Plus
Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCG 145684
|||||||| || | || || || |||||||| |||| | | |||| | |||||||||
Sbjct 838 GCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCG 897
Query 145685 GCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCAC 145744
| ||||| ||||| || ||||| || ||||| || ||||| || || || ||||||
Sbjct 898 GTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAG 957
Query 145745 GCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGG 145804
||||||||||| |||||||| || ||| |||||| ||||| |||| |||| ||
Sbjct 958 GCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCC-----AAAATGG 1012
Query 145805 TG-----CAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCC 145859
| || | |||||| |||| | || | ||||||||| ||||| |
Sbjct 1013 CGAACCACAGCTGCTGCGCGCGCATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACCGCG 1072
Query 145860 TGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGAC 145919
||||||| ||||||| ||| || | || | |||||| || || |||||| |
Sbjct 1073 CGTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGC 1132
Query 145920 ACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACA 145979
| | ||| ||| |||| || | |||||||| |||||||| || || | |||||
Sbjct 1133 AGAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACA 1192
Query 145980 GCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGC--ACCCATGTTTC--GCTTCAAA 146035
|| |||| | || |||||| || || | |||| | || || ||| || ||
Sbjct 1193 GCCCGTAGAACAGGTCGCGGGC---GCGAGCCTCCTCCTTGCCGTGGTTCTTGC-GCAGG 1248
Query 146036 TTAAG-CACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTT 146094
| || || | || | |||||||||||| || || | || || || | ||| || ||
Sbjct 1249 TCCAGCCAGTCCAT-CACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTT 1307
Query 146095 TCGTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151
|| || ||| ||||||||||||| || || ||| ||| || ||||||| ||||||
Sbjct 1308 GCGCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGG 1367
Query 146152 CTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCA 146211
| | |||||| || |||||| || || | || || ||| | |
Sbjct 1368 CACCACGCCGTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTC 1427
Query 146212 ATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGT 146271
|| | | || |||| ||||| || |||| || || ||||| || ||||||
Sbjct 1428 GTGCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGT 1487
Query 146272 CTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATC 146329
||||||||||| || ||||| ||| |||| ||| | | || |||||| || || |
Sbjct 1488 GTCGTAGATGCCCTCGATGCTGTCGCCCTTC--ATGGCCACCAAAAAGCAGCTGCTCAGC 1545
Query 146330 TGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGG 146389
|||| || || ||||| ||| | |||||| ||||||||| ||| ||
Sbjct 1546 TGCGGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGG 1605
Query 146390 CTCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCG 146449
|||| || | ||||| ||||| || | | ||| || || ||||||| |
Sbjct 1606 CTCAGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGAC 1665
Query 146450 ACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484
|||||||| |||||||| || || |||||| ||||
Sbjct 1666 ACGCGCATCAGCATGTGCTGCGGACGCTCCACCAC 1700
>seq60
Length=8765
Score = 156 bits (172), Expect = 4e-33
Identities = 343/505 (68%), Gaps = 22/505 (4%)
Strand=Plus/Plus
Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158
||||| |||||||||| || ||||||||| || | | || || || |||||
Sbjct 2549 AAGAAGGCCGACTGGGCTCTGCGCTGGATCAACGGCT---CGGAGAGCTTTGCGGAGCGC 2605
Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218
||||||| |||||| ||||||||| | || || ||||| || | ||||||
Sbjct 2606 CTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTTCTGCTCCATCTAC 2665
Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277
| |||| || | || | ||||||||||||| || ||| ||||||||| || || ||
Sbjct 2666 TGGGTCAAGAAGCGCGGTC-TCATGCCCGGCCTCACCTTTTCCAACGAGCTCATCTCTCG 2724
Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAA 46337
|| ||||||||||| || |||||||| || || || |||| | ||| || |
Sbjct 2725 TGATGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCT-----ACTC-CATGCTCG---A 2775
Query 46338 GCTTGCGCCCGACACCGTG---CTGAGCATGTTCAAG---GAGGCGGTGGCCATTGAGAA 46391
|| ||| || || || | |||| | | || | ||||| |||| || |||||
Sbjct 2776 GCACCCGCTCGCCATCGAGCGTCTGAACCAGCTCGTGGGCGAGGCCGTGGAAATCGAGAA 2835
Query 46392 GGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTG 46451
||||||| | | || ||||| | | || | |||||||||| || ||| |
Sbjct 2836 GGAGTTTGTCTGCGATGCCCTGCCGGTGGATCTCATCGGCATGAACGGCAAGCTGATGAG 2895
Query 46452 CGACTACATCGAGTTTGT-AGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATT 46510
| | ||||| |||||||| ||| ||||| |||||||| || ||| |||| |
Sbjct 2896 CCAGTACATTGAGTTTGTGAGC-GACCGGCTGCTCGTCGCCCTGGGTGCGCCCAAGCTCT 2954
Query 46511 TTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATT 46570
|||| |||||| || || | ||| | |||||| ||| ||||||| || || |
Sbjct 2955 ACAACGCCACCAATCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACT 3014
Query 46571 TTTTCGAAAAGCGCGTCGGCGAGTA 46595
||||||| ||||||||||| || ||
Sbjct 3015 TTTTCGAGAAGCGCGTCGGAGACTA 3039
>seq2724
Length=1646
Score = 129 bits (142), Expect = 6e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| ||||||| ||| || || | ||| | ||| |||||||| || |||||||| |||
Sbjct 1308 GCCGCCGCGCAGACGGAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1367
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| ||||| ||||| ||||||||||| ||| | || | ||||||||||| |||||
Sbjct 1368 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGG 1427
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| || || ||||| ||| || ||||| | ||| | || || | ||||| |
Sbjct 1428 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCAC 1487
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|||| ||| | ||| || || || || || || ||||| |||||||||
Sbjct 1488 CTCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 1536
>seq55
Length=8980
Score = 105 bits (116), Expect = 6e-18
Identities = 108/140 (77%), Gaps = 1/140 (1%)
Strand=Plus/Plus
Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061
|||| ||| ||||||| || || || | || | ||| |||||||| || ||||||||
Sbjct 4006 ATGATGCCGCCGCGCAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAG 4065
Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121
||| || |||||| |||||| ||||||||||| ||| |||| | |||||||||||
Sbjct 4066 TCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 4125
Query 131122 GGAGGGATTCCTTCTTTGTC 131141
|| ||||| || || |||||
Sbjct 4126 GGGGGGATGCCCTCCTTGTC 4145
>seq3257
Length=1341
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096
||| |||||||| || |||||||| ||| || ||||| ||||| |||||||||||
Sbjct 15 GGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCC 74
Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156
||| | || | ||||||||||| ||||| || || || ||||| ||| || |||
Sbjct 75 CGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 134
Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACC 131207
|| | || | ||| || | ||||| | |||| ||| | ||| || ||
Sbjct 135 GACGTTTTCAATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCC 185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471979369693440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |