Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq2724 105 5e-18
seq55 84.2 2e-11
>seq2724
Length=1646
Score = 105 bits (116), Expect = 5e-18
Identities = 153/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||| || || |||||||| || ||||||||||||| || || | | |||
Sbjct 1324 AGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 1383
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || |||||||| |||| || ||||| ||||| ||| | |||||| |||||
Sbjct 1384 TCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 1443
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || ||| || | | | ||||| | |||| || | ||||||||
Sbjct 1444 TGGATCTTGGC--CTTGACGTTCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGG 1501
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || |||||||| ||||| || ||||||||
Sbjct 1502 TCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 1535
>seq55
Length=8980
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| || |||||||||||||||| ||| | |||||
Sbjct 4027 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 4086
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| || ||||| || | || || ||||| ||||| || | |||||| |||||
Sbjct 4087 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405060026901340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |