Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq81 107 2e-18 seq74 100 3e-16 >seq81 Length=8194 Score = 107 bits (118), Expect = 2e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 126181 GTGTAAATGTAGCGGGGAGCTGCCGAA-TCCTTGCCTCCCTCCAACCGCGTGCCAAACTG 126239 ||| | |||||||| | |||| || |||||||| |||| || |||||||||||||| Sbjct 311 GTGAAGATGTAGCGCGC-GCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTG 369 Query 126240 ACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGAC 126299 ||| | |||| ||| | | || ||||||| |||||||||||||| || | || Sbjct 370 ACCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCAC 429 Query 126300 AATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCC 126359 ||||| | ||| ||||||||| | ||| || ||| ||| ||||||||||| Sbjct 430 GATGGTGCCCATGAGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCC 489 Query 126360 GCTCAGCTGCGCAACCTTGAT 126380 ||||||||| |||||||| Sbjct 490 CGCCAGCTGCGCGACCTTGAT 510 >seq74 Length=8418 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15059 GGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCCCCAG 15118 |||||||||||| ||| | | ||||||||||| |||||| | | | ||||| Sbjct 6366 GGCGACAAGTTTGCCTCGAGACACGGACAAAAGGGCACCATCGGCATCACCTACACCCAG 6425 Query 15119 GAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGC 15178 || |||||||| ||| ||||| ||||| ||||||| | |||||||||||| || | Sbjct 6426 GAGGACATGCCTTTTTCCGCGCAGGGCATCGTGCCCGACCTCATCATCAACCCCCACGCC 6485 Query 15179 ATCCCGTCCCGCATGACCAT 15198 ||||| || ||||||||||| Sbjct 6486 ATCCCCTCGCGCATGACCAT 6505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611348698161600