Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq81 132 1e-25
seq114 109 1e-18
seq3504 107 4e-18
>seq81
Length=8194
Score = 132 bits (146), Expect = 1e-25
Identities = 205/293 (70%), Gaps = 0/293 (0%)
Strand=Plus/Minus
Query 218533 GAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGC 218592
|||||||| ||||||||||| || ||||||| || || ||||||| ||||| ||
Sbjct 630 GAGCTCATCCTTTTCTCGCGCGCCGACCTGGAGCGCTCCATCCCCAGCGCCGTGGACGGG 571
Query 218593 CTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAAGAA 218652
||||| || |||||| |||||||| |||||| |||||||| |||||| | ||
Sbjct 570 CTCAAACCCGGGCAGCGCAAGATCCTGTTTGCCTGCTTCAAGCGCAACCTGAAGAAGGAC 511
Query 218653 ATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAG 218712
|| |||||||| ||| | | || || || | || | | ||||||||||| |||
Sbjct 510 ATCAAGGTCGCGCAGCTGGCGGGCTACGTGGCGGAGAAGAGCGCGTACCATCACGGCGAG 451
Query 218713 CAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATG 218772
|| ||| |||| || ||| | || ||||||| ||||||| |||||| |
Sbjct 450 ACCTCCCTCATGGGCACCATCGTGGGCCTAGCCCAGGACTTTGTGGGCTCCAACAACGTC 391
Query 218773 AACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825
|||| ||| | || | ||||||||||| | || || ||| || |||||
Sbjct 390 AACTACCTGGTGCCGCAGGGTCAGTTTGGCACGCGCCTGCAGGGCGGCAAGGA 338
Score = 111 bits (122), Expect = 3e-19
Identities = 221/325 (68%), Gaps = 2/325 (1%)
Strand=Plus/Minus
Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896
||||| |||||||| || ||||||||||| || || ||||| || || || |
Sbjct 1326 TGCACCCTCATCCTCACCGAGGGAGACTCGGCCAAGACTCTGGCCGTGGCGGGCCTGTCG 1267
Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956
|||||||| || || | || || | ||||| ||||| || ||||| |||||||||||
Sbjct 1266 GTGGTGGGCCGCGATCGCTACGGAGTGTTCCCGCTCCGCGGCAAGCTCCTCAACGTGCGA 1207
Query 217957 GATGCCTCGGTTTCAAGCATTGCTGCAAATGCAGAGATTGCCGCCATCAAGCAAATCCTG 218016
||||| |||| | || | | || || |||||| ||||||||| ||||||
Sbjct 1206 GATGCTTCGGCGGCTCAGATCTCGGGCAACGCCGAGATTCAAAACATCAAGCAGATCCTG 1147
Query 218017 GGTCTTCAGGTTGGAAAGACTTACAAGGA-TGCGTCATCTCTGCGTTATGGCTCTGTCAT 218075
|| || ||| || ||| ||||| | ||| || | ||||| || ||| | ||||
Sbjct 1146 GGCCTGCAGCACGGCAAGGAGTACAACAACAGCGGCA-CGCTGCGCTACGGCCATCTCAT 1088
Query 218076 GCTTATGACTGATGCTGATGTTGACGGGTCCCACATTTCCGCCCTCGTTATGAACTTCTT 218135
| | ||||| ||| || ||||| |||||||| | ||| | ||||||| | |
Sbjct 1087 GATCATGACGGATCAGGACCACGACGGCTCCCACATCAAGGGTCTCATCATGAACTACCT 1028
Query 218136 CCACGCCCAGTTCCCCAGCCTCCTC 218160
||| || | ||||| || |||
Sbjct 1027 GCACACCTTTTATCCCAGTCTGCTC 1003
>seq114
Length=7431
Score = 109 bits (120), Expect = 1e-18
Identities = 390/601 (65%), Gaps = 13/601 (2%)
Strand=Plus/Plus
Query 293896 CACACTGCAGTCTCCTCCTTCGAGGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCC 293955
||||| || ||||| || | ||||||||||| ||||| | || ||||| |||| |
Sbjct 856 CACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCGGTGCACAGGTTGCTGCAC 915
Query 293956 TTGATGGTGCCCGCATTAGACTGCATGTTCTTGGCATTGACACTGTCTTTGTTGAGGACA 294015
||||| |||||| || ||| || ||||||| ||| ||| |||| || |
Sbjct 916 TTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAGGCGTCCTTGTACAGCATG 975
Query 294016 TATGGCATACCCGTTTCAATCTGAGTGGTGACCATGGTGTTCCAGACATC--GCGAGC-C 294072
|| ||| | ||||| || |||| | | |||| | ||| | | ||| || |
Sbjct 976 TAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAACCACAGCTGCTGCGCGCGC 1035
Query 294073 TTCACCACGCGCTTTGCCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCC 294132
|| | |||| || ||||| ||| ||| | ||| ||| || | ||
Sbjct 1036 ATCGTCTTGCGC---GCGCGGCCCTCGCGCTCGTACCGCGCGTAGAGCGACTCAAACTCG 1092
Query 294133 TTGCCATATACATCAGACAGGCCAGGGCACTCGTGAGGGTCAAGTAGAGACCACTGGGCA 294192
||| | || || | |||||| || ||||| ||| | || |||||| |
Sbjct 1093 GGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCAGAACAGGCTCCACTGCCCG 1152
Query 294193 TCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGG 294252
|| | ||| ||||||||||| || || || || ||||| |||| |||| || ||||
Sbjct 1153 TCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGCCCGTAGAACAGGTCGCGG 1212
Query 294253 GCGCGCAGGCT-CTCCTCACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGG 294311
||||| || || ||||| || || || || ||| ||| ||||||| | ||| |
Sbjct 1213 GCGCG-AGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAGCCAGTCCATCACGTCCGC 1271
Query 294312 ATGATGGGGTTCCAGATACACAGCAAAGGACCCCTT---CCTGCGTCCCCCCTGGTTGGC 294368
|| ||| ||||| ||||| ||||||| ||||| | ||| || ||||||| |
Sbjct 1272 GTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 1331
Query 294369 GTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACGATGCCATCGGACTCACCATT 294428
||| || ||| || ||||| |||||| ||||| | ||| | | | || ||
Sbjct 1332 GTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCACGCCGTTGCTCGTGCCGTT 1391
Query 294429 GGTTCCGCGAATCT-CAGCCCCGCGCCCGCGAATGTCGCTCATGTGGAGACCAATGCCAC 294487
||| || || || | | ||||| | |||| |||||| |||||| || || ||||| |
Sbjct 1392 GGTGCCCCGGATGTACGACCCCGTG-GCGCGGATGTCGTGCATGTGCAGCCCGATGCCGC 1450
Query 294488 C 294488
|
Sbjct 1451 C 1451
>seq3504
Length=1219
Score = 107 bits (118), Expect = 4e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|||||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||
Sbjct 1102 TAGCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 1161
Query 142562 GCCCCACATCGGGC 142575
||||||| ||||||
Sbjct 1162 GCCCCACTTCGGGC 1175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027762183545106
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |