Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq81 132 1e-25 seq114 109 1e-18 seq3504 107 4e-18 >seq81 Length=8194 Score = 132 bits (146), Expect = 1e-25 Identities = 205/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 218533 GAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGC 218592 |||||||| ||||||||||| || ||||||| || || ||||||| ||||| || Sbjct 630 GAGCTCATCCTTTTCTCGCGCGCCGACCTGGAGCGCTCCATCCCCAGCGCCGTGGACGGG 571 Query 218593 CTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAAGAA 218652 ||||| || |||||| |||||||| |||||| |||||||| |||||| | || Sbjct 570 CTCAAACCCGGGCAGCGCAAGATCCTGTTTGCCTGCTTCAAGCGCAACCTGAAGAAGGAC 511 Query 218653 ATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAG 218712 || |||||||| ||| | | || || || | || | | ||||||||||| ||| Sbjct 510 ATCAAGGTCGCGCAGCTGGCGGGCTACGTGGCGGAGAAGAGCGCGTACCATCACGGCGAG 451 Query 218713 CAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATG 218772 || ||| |||| || ||| | || ||||||| ||||||| |||||| | Sbjct 450 ACCTCCCTCATGGGCACCATCGTGGGCCTAGCCCAGGACTTTGTGGGCTCCAACAACGTC 391 Query 218773 AACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825 |||| ||| | || | ||||||||||| | || || ||| || ||||| Sbjct 390 AACTACCTGGTGCCGCAGGGTCAGTTTGGCACGCGCCTGCAGGGCGGCAAGGA 338 Score = 111 bits (122), Expect = 3e-19 Identities = 221/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| |||||||| || ||||||||||| || || ||||| || || || | Sbjct 1326 TGCACCCTCATCCTCACCGAGGGAGACTCGGCCAAGACTCTGGCCGTGGCGGGCCTGTCG 1267 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 |||||||| || || | || || | ||||| ||||| || ||||| ||||||||||| Sbjct 1266 GTGGTGGGCCGCGATCGCTACGGAGTGTTCCCGCTCCGCGGCAAGCTCCTCAACGTGCGA 1207 Query 217957 GATGCCTCGGTTTCAAGCATTGCTGCAAATGCAGAGATTGCCGCCATCAAGCAAATCCTG 218016 ||||| |||| | || | | || || |||||| ||||||||| |||||| Sbjct 1206 GATGCTTCGGCGGCTCAGATCTCGGGCAACGCCGAGATTCAAAACATCAAGCAGATCCTG 1147 Query 218017 GGTCTTCAGGTTGGAAAGACTTACAAGGA-TGCGTCATCTCTGCGTTATGGCTCTGTCAT 218075 || || ||| || ||| ||||| | ||| || | ||||| || ||| | |||| Sbjct 1146 GGCCTGCAGCACGGCAAGGAGTACAACAACAGCGGCA-CGCTGCGCTACGGCCATCTCAT 1088 Query 218076 GCTTATGACTGATGCTGATGTTGACGGGTCCCACATTTCCGCCCTCGTTATGAACTTCTT 218135 | | ||||| ||| || ||||| |||||||| | ||| | ||||||| | | Sbjct 1087 GATCATGACGGATCAGGACCACGACGGCTCCCACATCAAGGGTCTCATCATGAACTACCT 1028 Query 218136 CCACGCCCAGTTCCCCAGCCTCCTC 218160 ||| || | ||||| || ||| Sbjct 1027 GCACACCTTTTATCCCAGTCTGCTC 1003 >seq114 Length=7431 Score = 109 bits (120), Expect = 1e-18 Identities = 390/601 (65%), Gaps = 13/601 (2%) Strand=Plus/Plus Query 293896 CACACTGCAGTCTCCTCCTTCGAGGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCC 293955 ||||| || ||||| || | ||||||||||| ||||| | || ||||| |||| | Sbjct 856 CACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCGGTGCACAGGTTGCTGCAC 915 Query 293956 TTGATGGTGCCCGCATTAGACTGCATGTTCTTGGCATTGACACTGTCTTTGTTGAGGACA 294015 ||||| |||||| || ||| || ||||||| ||| ||| |||| || | Sbjct 916 TTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAGGCGTCCTTGTACAGCATG 975 Query 294016 TATGGCATACCCGTTTCAATCTGAGTGGTGACCATGGTGTTCCAGACATC--GCGAGC-C 294072 || ||| | ||||| || |||| | | |||| | ||| | | ||| || | Sbjct 976 TAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAACCACAGCTGCTGCGCGCGC 1035 Query 294073 TTCACCACGCGCTTTGCCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCC 294132 || | |||| || ||||| ||| ||| | ||| ||| || | || Sbjct 1036 ATCGTCTTGCGC---GCGCGGCCCTCGCGCTCGTACCGCGCGTAGAGCGACTCAAACTCG 1092 Query 294133 TTGCCATATACATCAGACAGGCCAGGGCACTCGTGAGGGTCAAGTAGAGACCACTGGGCA 294192 ||| | || || | |||||| || ||||| ||| | || |||||| | Sbjct 1093 GGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCAGAACAGGCTCCACTGCCCG 1152 Query 294193 TCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGG 294252 || | ||| ||||||||||| || || || || ||||| |||| |||| || |||| Sbjct 1153 TCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGCCCGTAGAACAGGTCGCGG 1212 Query 294253 GCGCGCAGGCT-CTCCTCACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGG 294311 ||||| || || ||||| || || || || ||| ||| ||||||| | ||| | Sbjct 1213 GCGCG-AGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAGCCAGTCCATCACGTCCGC 1271 Query 294312 ATGATGGGGTTCCAGATACACAGCAAAGGACCCCTT---CCTGCGTCCCCCCTGGTTGGC 294368 || ||| ||||| ||||| ||||||| ||||| | ||| || ||||||| | Sbjct 1272 GTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 1331 Query 294369 GTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACGATGCCATCGGACTCACCATT 294428 ||| || ||| || ||||| |||||| ||||| | ||| | | | || || Sbjct 1332 GTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCACGCCGTTGCTCGTGCCGTT 1391 Query 294429 GGTTCCGCGAATCT-CAGCCCCGCGCCCGCGAATGTCGCTCATGTGGAGACCAATGCCAC 294487 ||| || || || | | ||||| | |||| |||||| |||||| || || ||||| | Sbjct 1392 GGTGCCCCGGATGTACGACCCCGTG-GCGCGGATGTCGTGCATGTGCAGCCCGATGCCGC 1450 Query 294488 C 294488 | Sbjct 1451 C 1451 >seq3504 Length=1219 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 1102 TAGCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 1161 Query 142562 GCCCCACATCGGGC 142575 ||||||| |||||| Sbjct 1162 GCCCCACTTCGGGC 1175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027762183545106