Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq114 488 1e-132 seq60 212 1e-49 seq2314 143 5e-29 >seq114 Length=7431 Score = 488 bits (540), Expect = 1e-132 Identities = 1069/1591 (67%), Gaps = 68/1591 (4%) Strand=Plus/Plus Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGT 243935 ||||| | |||||||||||||| | ||| |||| || || ||||||||| || || Sbjct 12 GTTGAAGCTCTGGCTCTGGTCGATGTAGG-CGCCGCGGTCGGCGGCCATGTCGACCAGCA 70 Query 243936 CCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTT 243995 | ||| ||||| || |||||||||| | | |||||||| |||||| | | | Sbjct 71 CGCGCTGCTTGATCTCCCACACCGTCTTGTACAGGCCCTTGAGGTCCTCGGGCA---CGT 127 Query 243996 CGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACA 244055 ||| | | |||||| || |||| | | |||| | | | || ||| ||| | Sbjct 128 CGAGGGCCGCCACCGACCCGCCGTGGGCCACCAGCTCGTTCTTGAGGTCGGCGTCCCAGA 187 Query 244056 GGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACA 244115 | |||| |||| || | | | |||||| ||| ||||| ||||| ||||| | Sbjct 188 GCCCCAGGCGCGTGAGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAACTCGCCCGAGA 247 Query 244116 GCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTA 244175 ||||||||||| ||||| ||||||| || ||||||| || ||| ||||||||| | Sbjct 248 GCACGCGGCGCACGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGA 307 Query 244176 TCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGC- 244234 |||| |||||||| || |||||||||| ||||||||| ||| | || |||||| Sbjct 308 TCTGGCTGGTGCTCGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCAGCCCGTGCT 367 Query 244235 --CTCTGGAT-GCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGT 244291 | | | | ||| | || | | |||||||||| ||||| || | | Sbjct 368 CGCGCACGGTCGCG----CGCAGGGCCTCCCAGTCCCACC-GCCCGCT-----CTGGGGC 417 Query 244292 TTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCT--CGTAGG 244349 | | |||||||| ||| ||||||| |||| | |||| | | || |||||| Sbjct 418 GTCACGCCCCACAGGTCGTGCTGCAGCTTGCCCTGG--GACGCCGGAGACCCGGCGTAGG 475 Query 244350 TCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGA 244409 || ||| || |||||||| |||| |||| || | || ||||||||||||| Sbjct 476 TCTCGTACGGCCCGTCGCGGCGGGCGAGCTCGCACGAGGTGCGCAGCGCGGCGTAGTAGA 535 Query 244410 TGGTCTCGAAGATCATCTTGTTCATGTCGCG-GGCCTTGCCGCAGGTGAAGGGGATGCCC 244468 |||||||||||| ||| | | ||| ||||| | | | ||||| |||||| Sbjct 536 CGGTCTCGAAGATGTCGCGGTTGAGCT-GCGCGGCCTCGGGCCCGTCAAAGGGCATGCCC 594 Query 244469 ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTG 244528 | || |||||| |||||||||| ||||||||||| | ||||||||| | ||| || | Sbjct 595 AGCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCCAGGCCGATGGGGCGGTGCCGGAGG 654 Query 244529 TTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 ||| |||| ||| |||| |||||||| |||| ||||||| | ||| |||||| Sbjct 655 TTGCTGCGCTCGGCCGCGGGGACGGGGTAGTGGTTGACGTCGATGATGCGGTTCAGGTTG 714 Query 244589 CGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA------------CTCG 244636 || || || ||||| || |||||| | | ||||||| | | || Sbjct 715 CGCGTCGCCACCGACACGACCTCCGCCAGCCGGTCAAAGTCGAAGCGGCGCGTGGCCGCG 774 Query 244637 T--AGGGATCCTCGGCGATGGTGATCCTCACAAAC-------TCGTTGAGG--------- 244678 | | ||| || | | | | | |||| | | || |||| | Sbjct 775 TCCAAGGAGCCCACGAGCTTGCGGCCCTCGCGGCCCTGGCCGTCCTTGACGAAGCGCGGC 834 Query 244679 ---GCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATC 244735 |||| ||| |||||||| |||||| ||| || | | ||||||| ||| ||| Sbjct 835 AGCGCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATC 894 Query 244736 TCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTG 244795 |||||||| ||||| ||||||||||| |||||||||| ||| || ||| |||||||||| Sbjct 895 TCGGTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTG 954 Query 244796 CAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTG 244855 |||||||||||||| |||||| ||||| || ||||| ||| || | | | | | Sbjct 955 CAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCG 1014 Query 244856 TTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTG 244915 ||| || | | || | |||| |||| || |||||| |||||| || | | Sbjct 1015 AACCACAGCTGCTGCGCGCGCATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACCGCGCG 1074 Query 244916 TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CA 244974 || || | ||| |||||||||||||| || || | ||||| || | | || ||| || Sbjct 1075 TAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGG-CGCCTCGTTGGGGCA 1133 Query 244975 CATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAG 245034 | || ||||||| ||| | ||| ||| | || ||| || |||||||||||||| || Sbjct 1134 GAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAG 1193 Query 245035 GGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAA 245094 | | ||| ||||| | || | ||| ||| ||| |||||| | ||| |||| Sbjct 1194 CCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAG 1253 Query 245095 AAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTT 245154 |||| | ||||| ||||||||||||||| ||| || || | |||||| ||||| Sbjct 1254 CCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTT 1313 Query 245155 GTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCA 245210 | ||| |||||||||| | | ||||| ||||||| | |||||| | |||| Sbjct 1314 GCCGCCGCCCTGGTCCA----CGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCA 1369 Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270 | | |||||| ||||||||||||| |||||| | ||| || | | || || | Sbjct 1370 CCACGCCGTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTCGT 1429 Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330 ||| || || | ||||| ||| |||| |||| ||||| ||||| |||| Sbjct 1430 GCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTGT 1489 Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390 | |||||||| |||||||| ||||||| | || ||||||| | |||||| | Sbjct 1490 CGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCG 1549 Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGG 245421 | |||| ||| || |||||| || || || Sbjct 1550 GGCGGGGGGTGCCCGCGTTGAAGAGCGTCGG 1580 >seq60 Length=8765 Score = 212 bits (234), Expect = 1e-49 Identities = 372/532 (70%), Gaps = 16/532 (3%) Strand=Plus/Plus Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677 |||| |||||| | ||| | ||||||||||| |||||||| || ||||||| | Sbjct 2522 GCCACCGAGACGGTACCCGTGGTGAAGAAGAAGGCCGACTGGGCTCTGCGCTGGATCAAC 2581 Query 42678 AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTC 42737 | | || | || | ||| | ||||| || ||| | ||| |||||||| ||| Sbjct 2582 GGCTCGGAG---AGCTTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTC 2638 Query 42738 TTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACT 42796 ||| ||| |||| |||||||| |||| ||||| || ||| || |||||||| || Sbjct 2639 TTCAGCGGCAGCTTCTGCTCCATCTACTGGGTCAAGAAGCGCGGTCTC-ATGCCCGGCCT 2697 Query 42797 CACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 |||||| || ||||| |||||| | || ||||| ||||| | |||||||||||||| Sbjct 2698 CACCTTTTCCAACGAGCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCT 2757 Query 42857 CCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCA--TCATC 42914 || | ||| | | || |||| || | | | ||||| || | ||| || | Sbjct 2758 GCTCTACTCCATGC---TCGAGCACCCGCTCGCCATCGAGCG--TCTGAACCAGCTCGTG 2812 Query 42915 ACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTC 42974 ||||||||||| |||||||||||||| || | | ||||| ||| || || Sbjct 2813 GGCGAGGCCGTGGAAATCGAGAAGGAGTTTGTCTGCGATGCCCTGCCGGTGGATCTCATC 2872 Query 42975 GGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GT- 43032 ||||||||| | | || ||| || ||||||| ||| || ||||| || || || Sbjct 2873 GGCATGAACGGCAAGCTGATGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGCTCGTC 2932 Query 43033 GCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACA 43092 ||| ||||| | ||||||||| | | || ||||||| |||||| || Sbjct 2933 GCCC--TGGGTGCGCCCAAGCTCTACAACGCCACCAATCCGTTCGACTGGATGGAGCTCA 2990 Query 43093 TCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||| || ||||||||||||||||||||||||||||||||| |||||||| Sbjct 2991 TCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGAGACTACCA 3042 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 |||| || || ||||| || | ||| || ||||| ||| |||||||||| | | | Sbjct 2201 ACATCCTCGCTTTCTTTGCTGGCTCCGATGGCATCGTCCTGGAGAACCTGGGCGTGCGTT 2260 Query 42478 TCATGAAAGAGGTG-CAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 | |||||||||||| | || | ||||| || ||| ||||| |||||||| ||||| Sbjct 2261 TTATGAAAGAGGTGACCGTTC-CCGAGGCCCGTGCCTTTTACGGGTTCCAGATTGCCATC 2319 Query 42537 GAGAACGTGCACTCTGAGGTGTAC 42560 |||||| | ||||||||| ||||| Sbjct 2320 GAGAACATCCACTCTGAGATGTAC 2343 >seq2314 Length=1923 Score = 143 bits (158), Expect = 5e-29 Identities = 293/427 (69%), Gaps = 9/427 (2%) Strand=Plus/Minus Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GG 42780 ||| ||||||||| |||| ||||||||| | |||||| ||||||||| || || Sbjct 1811 CGTGGAGGGCATCCACTTCAGCGGCGCCTTCTGCGCCATCTACTGGCTCAAAAAGCGCGG 1752 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || ||||| || |||||||| || ||||| ||||| |||||||||| ||||| | Sbjct 1751 CCTC-ATGCCGGGGCTCACCTTTTCCAACGAGCTCATTTCTCGGGACGAGGGCCTGCACA 1693 Query 42841 GGGACTTTGCCTGCCTCCTGT-TCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899 |||||||||||||| || | | || || | || || | | || || || Sbjct 1692 CCGACTTTGCCTGCCTGCTCTACCGCGGGCTGCGTC--GCCC--CCTCTGTCCGGCGCAA 1637 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959 | | |||||| || ||||||||||| | ||| |||||| | | |||| Sbjct 1636 GCCTACGCCATCGTCGAGGAGGCCGTGGCCCTGGAGCGCGAGTTCACGGCCTCGGCGCTC 1577 Query 42960 CCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019 || ||| || |||| |||||| || | |||| || ||||| |||||| ||| ||| Sbjct 1576 CCGGTGGATCTCATCGGGATGAACGCCGCCGCCATGGGCGAGTACGTCCAGTTCGTGGCC 1517 Query 43020 GACCATCTCCTGTGCCAGATGGGTCTCAGC-CGCCTCTACAACACGCCGTGCCCCTTCGA 43078 |||| || || | ||| | || || | ||||||| | | ||||||||| Sbjct 1516 GACCGCCTGCT-CGTCAGCCTCGGCTACGCGCCGCTCTACAGGGCCAAGAACCCCTTCGA 1458 Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGA 43138 || |||||| ||||||| | |||||||||| |||||||||||| ||||| | || Sbjct 1457 CTGGATGGAGCTCATCTCGCTCCAGGGCAAGACGAACTTTTTCGAGCGCCGCGTGGGGGA 1398 Query 43139 CTACCAG 43145 |||||| Sbjct 1397 GTACCAG 1391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944272317176160