Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq114 488 1e-132
seq60 212 1e-49
seq2314 143 5e-29
>seq114
Length=7431
Score = 488 bits (540), Expect = 1e-132
Identities = 1069/1591 (67%), Gaps = 68/1591 (4%)
Strand=Plus/Plus
Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGT 243935
||||| | |||||||||||||| | ||| |||| || || ||||||||| || ||
Sbjct 12 GTTGAAGCTCTGGCTCTGGTCGATGTAGG-CGCCGCGGTCGGCGGCCATGTCGACCAGCA 70
Query 243936 CCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTT 243995
| ||| ||||| || |||||||||| | | |||||||| |||||| | | |
Sbjct 71 CGCGCTGCTTGATCTCCCACACCGTCTTGTACAGGCCCTTGAGGTCCTCGGGCA---CGT 127
Query 243996 CGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACA 244055
||| | | |||||| || |||| | | |||| | | | || ||| ||| |
Sbjct 128 CGAGGGCCGCCACCGACCCGCCGTGGGCCACCAGCTCGTTCTTGAGGTCGGCGTCCCAGA 187
Query 244056 GGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACA 244115
| |||| |||| || | | | |||||| ||| ||||| ||||| ||||| |
Sbjct 188 GCCCCAGGCGCGTGAGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAACTCGCCCGAGA 247
Query 244116 GCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTA 244175
||||||||||| ||||| ||||||| || ||||||| || ||| ||||||||| |
Sbjct 248 GCACGCGGCGCACGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGA 307
Query 244176 TCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGC- 244234
|||| |||||||| || |||||||||| ||||||||| ||| | || ||||||
Sbjct 308 TCTGGCTGGTGCTCGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCAGCCCGTGCT 367
Query 244235 --CTCTGGAT-GCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGT 244291
| | | | ||| | || | | |||||||||| ||||| || | |
Sbjct 368 CGCGCACGGTCGCG----CGCAGGGCCTCCCAGTCCCACC-GCCCGCT-----CTGGGGC 417
Query 244292 TTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCT--CGTAGG 244349
| | |||||||| ||| ||||||| |||| | |||| | | || ||||||
Sbjct 418 GTCACGCCCCACAGGTCGTGCTGCAGCTTGCCCTGG--GACGCCGGAGACCCGGCGTAGG 475
Query 244350 TCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGA 244409
|| ||| || |||||||| |||| |||| || | || |||||||||||||
Sbjct 476 TCTCGTACGGCCCGTCGCGGCGGGCGAGCTCGCACGAGGTGCGCAGCGCGGCGTAGTAGA 535
Query 244410 TGGTCTCGAAGATCATCTTGTTCATGTCGCG-GGCCTTGCCGCAGGTGAAGGGGATGCCC 244468
|||||||||||| ||| | | ||| ||||| | | | ||||| ||||||
Sbjct 536 CGGTCTCGAAGATGTCGCGGTTGAGCT-GCGCGGCCTCGGGCCCGTCAAAGGGCATGCCC 594
Query 244469 ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTG 244528
| || |||||| |||||||||| ||||||||||| | ||||||||| | ||| || |
Sbjct 595 AGCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCCAGGCCGATGGGGCGGTGCCGGAGG 654
Query 244529 TTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588
||| |||| ||| |||| |||||||| |||| ||||||| | ||| ||||||
Sbjct 655 TTGCTGCGCTCGGCCGCGGGGACGGGGTAGTGGTTGACGTCGATGATGCGGTTCAGGTTG 714
Query 244589 CGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA------------CTCG 244636
|| || || ||||| || |||||| | | ||||||| | | ||
Sbjct 715 CGCGTCGCCACCGACACGACCTCCGCCAGCCGGTCAAAGTCGAAGCGGCGCGTGGCCGCG 774
Query 244637 T--AGGGATCCTCGGCGATGGTGATCCTCACAAAC-------TCGTTGAGG--------- 244678
| | ||| || | | | | | |||| | | || |||| |
Sbjct 775 TCCAAGGAGCCCACGAGCTTGCGGCCCTCGCGGCCCTGGCCGTCCTTGACGAAGCGCGGC 834
Query 244679 ---GCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATC 244735
|||| ||| |||||||| |||||| ||| || | | ||||||| ||| |||
Sbjct 835 AGCGCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATC 894
Query 244736 TCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTG 244795
|||||||| ||||| ||||||||||| |||||||||| ||| || ||| ||||||||||
Sbjct 895 TCGGTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTG 954
Query 244796 CAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTG 244855
|||||||||||||| |||||| ||||| || ||||| ||| || | | | | |
Sbjct 955 CAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCG 1014
Query 244856 TTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTG 244915
||| || | | || | |||| |||| || |||||| |||||| || | |
Sbjct 1015 AACCACAGCTGCTGCGCGCGCATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACCGCGCG 1074
Query 244916 TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CA 244974
|| || | ||| |||||||||||||| || || | ||||| || | | || ||| ||
Sbjct 1075 TAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGG-CGCCTCGTTGGGGCA 1133
Query 244975 CATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAG 245034
| || ||||||| ||| | ||| ||| | || ||| || |||||||||||||| ||
Sbjct 1134 GAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAG 1193
Query 245035 GGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAA 245094
| | ||| ||||| | || | ||| ||| ||| |||||| | ||| ||||
Sbjct 1194 CCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAG 1253
Query 245095 AAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTT 245154
|||| | ||||| ||||||||||||||| ||| || || | |||||| |||||
Sbjct 1254 CCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTT 1313
Query 245155 GTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCA 245210
| ||| |||||||||| | | ||||| ||||||| | |||||| | ||||
Sbjct 1314 GCCGCCGCCCTGGTCCA----CGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCA 1369
Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270
| | |||||| ||||||||||||| |||||| | ||| || | | || || |
Sbjct 1370 CCACGCCGTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTCGT 1429
Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330
||| || || | ||||| ||| |||| |||| ||||| ||||| ||||
Sbjct 1430 GCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTGT 1489
Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390
| |||||||| |||||||| ||||||| | || ||||||| | |||||| |
Sbjct 1490 CGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCG 1549
Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGG 245421
| |||| ||| || |||||| || || ||
Sbjct 1550 GGCGGGGGGTGCCCGCGTTGAAGAGCGTCGG 1580
>seq60
Length=8765
Score = 212 bits (234), Expect = 1e-49
Identities = 372/532 (70%), Gaps = 16/532 (3%)
Strand=Plus/Plus
Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677
|||| |||||| | ||| | ||||||||||| |||||||| || ||||||| |
Sbjct 2522 GCCACCGAGACGGTACCCGTGGTGAAGAAGAAGGCCGACTGGGCTCTGCGCTGGATCAAC 2581
Query 42678 AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTC 42737
| | || | || | ||| | ||||| || ||| | ||| |||||||| |||
Sbjct 2582 GGCTCGGAG---AGCTTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTC 2638
Query 42738 TTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACT 42796
||| ||| |||| |||||||| |||| ||||| || ||| || |||||||| ||
Sbjct 2639 TTCAGCGGCAGCTTCTGCTCCATCTACTGGGTCAAGAAGCGCGGTCTC-ATGCCCGGCCT 2697
Query 42797 CACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856
|||||| || ||||| |||||| | || ||||| ||||| | ||||||||||||||
Sbjct 2698 CACCTTTTCCAACGAGCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCT 2757
Query 42857 CCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCA--TCATC 42914
|| | ||| | | || |||| || | | | ||||| || | ||| || |
Sbjct 2758 GCTCTACTCCATGC---TCGAGCACCCGCTCGCCATCGAGCG--TCTGAACCAGCTCGTG 2812
Query 42915 ACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTC 42974
||||||||||| |||||||||||||| || | | ||||| ||| || ||
Sbjct 2813 GGCGAGGCCGTGGAAATCGAGAAGGAGTTTGTCTGCGATGCCCTGCCGGTGGATCTCATC 2872
Query 42975 GGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GT- 43032
||||||||| | | || ||| || ||||||| ||| || ||||| || || ||
Sbjct 2873 GGCATGAACGGCAAGCTGATGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGCTCGTC 2932
Query 43033 GCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACA 43092
||| ||||| | ||||||||| | | || ||||||| |||||| ||
Sbjct 2933 GCCC--TGGGTGCGCCCAAGCTCTACAACGCCACCAATCCGTTCGACTGGATGGAGCTCA 2990
Query 43093 TCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
||||| || ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2991 TCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGAGACTACCA 3042
Score = 91.5 bits (100), Expect = 3e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477
|||| || || ||||| || | ||| || ||||| ||| |||||||||| | | |
Sbjct 2201 ACATCCTCGCTTTCTTTGCTGGCTCCGATGGCATCGTCCTGGAGAACCTGGGCGTGCGTT 2260
Query 42478 TCATGAAAGAGGTG-CAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536
| |||||||||||| | || | ||||| || ||| ||||| |||||||| |||||
Sbjct 2261 TTATGAAAGAGGTGACCGTTC-CCGAGGCCCGTGCCTTTTACGGGTTCCAGATTGCCATC 2319
Query 42537 GAGAACGTGCACTCTGAGGTGTAC 42560
|||||| | ||||||||| |||||
Sbjct 2320 GAGAACATCCACTCTGAGATGTAC 2343
>seq2314
Length=1923
Score = 143 bits (158), Expect = 5e-29
Identities = 293/427 (69%), Gaps = 9/427 (2%)
Strand=Plus/Minus
Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GG 42780
||| ||||||||| |||| ||||||||| | |||||| ||||||||| || ||
Sbjct 1811 CGTGGAGGGCATCCACTTCAGCGGCGCCTTCTGCGCCATCTACTGGCTCAAAAAGCGCGG 1752
Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840
|| ||||| || |||||||| || ||||| ||||| |||||||||| ||||| |
Sbjct 1751 CCTC-ATGCCGGGGCTCACCTTTTCCAACGAGCTCATTTCTCGGGACGAGGGCCTGCACA 1693
Query 42841 GGGACTTTGCCTGCCTCCTGT-TCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899
|||||||||||||| || | | || || | || || | | || || ||
Sbjct 1692 CCGACTTTGCCTGCCTGCTCTACCGCGGGCTGCGTC--GCCC--CCTCTGTCCGGCGCAA 1637
Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959
| | |||||| || ||||||||||| | ||| |||||| | | ||||
Sbjct 1636 GCCTACGCCATCGTCGAGGAGGCCGTGGCCCTGGAGCGCGAGTTCACGGCCTCGGCGCTC 1577
Query 42960 CCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019
|| ||| || |||| |||||| || | |||| || ||||| |||||| ||| |||
Sbjct 1576 CCGGTGGATCTCATCGGGATGAACGCCGCCGCCATGGGCGAGTACGTCCAGTTCGTGGCC 1517
Query 43020 GACCATCTCCTGTGCCAGATGGGTCTCAGC-CGCCTCTACAACACGCCGTGCCCCTTCGA 43078
|||| || || | ||| | || || | ||||||| | | |||||||||
Sbjct 1516 GACCGCCTGCT-CGTCAGCCTCGGCTACGCGCCGCTCTACAGGGCCAAGAACCCCTTCGA 1458
Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGA 43138
|| |||||| ||||||| | |||||||||| |||||||||||| ||||| | ||
Sbjct 1457 CTGGATGGAGCTCATCTCGCTCCAGGGCAAGACGAACTTTTTCGAGCGCCGCGTGGGGGA 1398
Query 43139 CTACCAG 43145
||||||
Sbjct 1397 GTACCAG 1391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944272317176160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |