Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq81 118 3e-21 seq2724 116 9e-21 >seq81 Length=8194 Score = 118 bits (130), Expect = 3e-21 Identities = 269/397 (68%), Gaps = 12/397 (3%) Strand=Plus/Plus Query 326034 AGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCA 326093 ||||||||| |||||| ||||| | ||||| ||| || ||||||||||| | Sbjct 1032 AGTTCATGATGAGACCCTTGATGTGGGAGCCGTCGTGGTCCTGATCCGTCATGATCATGA 1091 Query 326094 CATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGGCCGAGAA 326153 ||| ||||| || |||| | ||| |||||| | || ||| || ||||| || | Sbjct 1092 GATGGCCGTAGCGCAGCGTGCCGCTGTTGTTGTACTCCTTGCCGTGCTGCAGGCCCAGGA 1151 Query 326154 TTTGTTTGAGCGCTGTGATT-TCTTCGTTCTTCGTGATGCTTGCCACGGATGCATCGCGG 326212 | || |||| | | ||| | || |||| || ||| ||| | || ||||| || Sbjct 1152 TCTGCTTGAT-GTTTTGAATCTCGGCGTTGCCCGAGATCTGAGCCGCCGAAGCATCTCGC 1210 Query 326213 ACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGAC 326272 ||||| | || || || || || ||||||||||| || | ||||| || ||||| ||| Sbjct 1211 ACGTTGAGGAGCTTGCCGCGGAGCGGGAACACTCCGTAGCGATCGCGGCCCACCACCGAC 1270 Query 326273 AGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCACATT 326332 || || || | || || ||| || || || ||||| || || ||||| |||||| Sbjct 1271 AGGCCCGCCACGGCCAGAGTCTTGGCCGAGTCTCCCTCGGTGAGGATGAGGGTGCAC--- 1327 Query 326333 TTGCTGTTATTCGTTCCAGCCCATG----TAGCATCGTTGAGTTTGGGAATTCCAGTCAC 326388 | | | | | | || |||| | | || |||| ||| |||||||| || ||| Sbjct 1328 TCGGAG-GAGTTGCGCCCGCCCGCGTCGTTTGCGTCGTCGAGCTTGGGAATGCCCAGCAC 1386 Query 326389 TCG-GATCTTCTTGGTACCGTCGGTCTTCTTCAGCTC 326424 || || | ||||| |||||| |||||||||||| Sbjct 1387 GCGAGAGC-GCTTGGCCCCGTCGCCCTTCTTCAGCTC 1422 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 || || || || || ||| ||||| || ||||||| | || || ||||| |||| | Sbjct 317 ATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGACCCTGC 376 Query 325382 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGT- 325440 |||| || |||||| ||| ||| || ||| | ||||| || ||| ||||||||| Sbjct 377 GGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACGATGGTG 436 Query 325441 CCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAA 325500 ||| || || || | ||||| || || || ||||| | ||| || ||||| || | Sbjct 437 CCCATG-AGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCCCGCCAG 495 Query 325501 CTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAA 325539 ||| || ||||| | ||| || ||| ||||||||||| Sbjct 496 CTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGAA 534 >seq2724 Length=1646 Score = 116 bits (128), Expect = 9e-21 Identities = 167/234 (71%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 |||||| || ||||| || | || || ||||||| || || || ||||| || || Sbjct 1303 TACATG-CCGCCGCGCAGACGGAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTA 1361 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 ||||| || ||||| || || || | || || || ||||| ||||| ||||| || Sbjct 1362 GTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTC 1421 Query 288360 ATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 || || || || || |||||||| || || || ||||| || || | || || Sbjct 1422 GGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGA 1481 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 1482 CTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 1535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179568762251548