Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq81 118 3e-21
seq2724 116 9e-21
>seq81
Length=8194
Score = 118 bits (130), Expect = 3e-21
Identities = 269/397 (68%), Gaps = 12/397 (3%)
Strand=Plus/Plus
Query 326034 AGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCA 326093
||||||||| |||||| ||||| | ||||| ||| || ||||||||||| |
Sbjct 1032 AGTTCATGATGAGACCCTTGATGTGGGAGCCGTCGTGGTCCTGATCCGTCATGATCATGA 1091
Query 326094 CATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGGCCGAGAA 326153
||| ||||| || |||| | ||| |||||| | || ||| || ||||| || |
Sbjct 1092 GATGGCCGTAGCGCAGCGTGCCGCTGTTGTTGTACTCCTTGCCGTGCTGCAGGCCCAGGA 1151
Query 326154 TTTGTTTGAGCGCTGTGATT-TCTTCGTTCTTCGTGATGCTTGCCACGGATGCATCGCGG 326212
| || |||| | | ||| | || |||| || ||| ||| | || ||||| ||
Sbjct 1152 TCTGCTTGAT-GTTTTGAATCTCGGCGTTGCCCGAGATCTGAGCCGCCGAAGCATCTCGC 1210
Query 326213 ACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGAC 326272
||||| | || || || || || ||||||||||| || | ||||| || ||||| |||
Sbjct 1211 ACGTTGAGGAGCTTGCCGCGGAGCGGGAACACTCCGTAGCGATCGCGGCCCACCACCGAC 1270
Query 326273 AGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCACATT 326332
|| || || | || || ||| || || || ||||| || || ||||| ||||||
Sbjct 1271 AGGCCCGCCACGGCCAGAGTCTTGGCCGAGTCTCCCTCGGTGAGGATGAGGGTGCAC--- 1327
Query 326333 TTGCTGTTATTCGTTCCAGCCCATG----TAGCATCGTTGAGTTTGGGAATTCCAGTCAC 326388
| | | | | | || |||| | | || |||| ||| |||||||| || |||
Sbjct 1328 TCGGAG-GAGTTGCGCCCGCCCGCGTCGTTTGCGTCGTCGAGCTTGGGAATGCCCAGCAC 1386
Query 326389 TCG-GATCTTCTTGGTACCGTCGGTCTTCTTCAGCTC 326424
|| || | ||||| |||||| ||||||||||||
Sbjct 1387 GCGAGAGC-GCTTGGCCCCGTCGCCCTTCTTCAGCTC 1422
Score = 100 bits (110), Expect = 7e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381
|| || || || || ||| ||||| || ||||||| | || || ||||| |||| |
Sbjct 317 ATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGACCCTGC 376
Query 325382 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGT- 325440
|||| || |||||| ||| ||| || ||| | ||||| || ||| |||||||||
Sbjct 377 GGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACGATGGTG 436
Query 325441 CCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAA 325500
||| || || || | ||||| || || || ||||| | ||| || ||||| || |
Sbjct 437 CCCATG-AGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCCCGCCAG 495
Query 325501 CTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAA 325539
||| || ||||| | ||| || ||| |||||||||||
Sbjct 496 CTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGAA 534
>seq2724
Length=1646
Score = 116 bits (128), Expect = 9e-21
Identities = 167/234 (71%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299
|||||| || ||||| || | || || ||||||| || || || ||||| || ||
Sbjct 1303 TACATG-CCGCCGCGCAGACGGAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTA 1361
Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359
||||| || ||||| || || || | || || || ||||| ||||| ||||| ||
Sbjct 1362 GTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTC 1421
Query 288360 ATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419
|| || || || || |||||||| || || || ||||| || || | || ||
Sbjct 1422 GGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGA 1481
Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct 1482 CTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 1535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179568762251548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |