Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq81 114 3e-20
seq905 102 2e-16
seq1043 87.8 4e-12
>seq81
Length=8194
Score = 114 bits (126), Expect = 3e-20
Identities = 268/397 (68%), Gaps = 12/397 (3%)
Strand=Plus/Plus
Query 298155 AGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCA 298214
||||||||| |||||| ||||| | ||||| ||| || ||||||||||| |
Sbjct 1032 AGTTCATGATGAGACCCTTGATGTGGGAGCCGTCGTGGTCCTGATCCGTCATGATCATGA 1091
Query 298215 CATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGGCCGAGAA 298274
||| ||||| || |||| | ||| |||||| | || ||| || ||||| || |
Sbjct 1092 GATGGCCGTAGCGCAGCGTGCCGCTGTTGTTGTACTCCTTGCCGTGCTGCAGGCCCAGGA 1151
Query 298275 TTTGTTTGAGCGCTGTGATT-TCTTCGTTCTTCGTGATGCTTGCCACGGATGCATCGCGG 298333
| || |||| | | ||| | || |||| || ||| ||| | || ||||| ||
Sbjct 1152 TCTGCTTGAT-GTTTTGAATCTCGGCGTTGCCCGAGATCTGAGCCGCCGAAGCATCTCGC 1210
Query 298334 ACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGAC 298393
|| || | || || || || || ||||||||||| || | ||||| || ||||| |||
Sbjct 1211 ACGTTGAGGAGCTTGCCGCGGAGCGGGAACACTCCGTAGCGATCGCGGCCCACCACCGAC 1270
Query 298394 AGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCACATT 298453
|| || || | || || ||| || || || ||||| || || ||||| ||||||
Sbjct 1271 AGGCCCGCCACGGCCAGAGTCTTGGCCGAGTCTCCCTCGGTGAGGATGAGGGTGCAC--- 1327
Query 298454 TTGCTGTTATTCGTTCCAGCCCATG----TAGCATCGTTGAGTTTGGGAATTCCAGTCAC 298509
| | | | | | || |||| | | || |||| ||| |||||||| || |||
Sbjct 1328 TCGGAG-GAGTTGCGCCCGCCCGCGTCGTTTGCGTCGTCGAGCTTGGGAATGCCCAGCAC 1386
Query 298510 TCG-GATCTTCTTGGTACCGTCGGTCTTCTTCAGCTC 298545
|| || | ||||| |||||| ||||||||||||
Sbjct 1387 GCGAGAGC-GCTTGGCCCCGTCGCCCTTCTTCAGCTC 1422
Score = 105 bits (116), Expect = 1e-17
Identities = 160/225 (71%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496
||||| || || || || || ||| ||||| || ||||||| | || || |||||
Sbjct 311 GTGAAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGA 370
Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556
|||| ||||| || |||||| ||| ||| || ||| | ||||| || ||| ||||
Sbjct 371 CCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACG 430
Query 297557 ATGGT-CCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACC 297615
||||| ||| || || || | ||||| || || || ||||| | ||| || ||||| ||
Sbjct 431 ATGGTGCCCATG-AGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCC 489
Query 297616 GCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAA 297660
| ||| || ||||| | ||| || ||| |||||||||||
Sbjct 490 CGCCAGCTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGAA 534
>seq905
Length=3633
Score = 102 bits (112), Expect = 2e-16
Identities = 198/290 (68%), Gaps = 2/290 (1%)
Strand=Plus/Minus
Query 48650 CTTATTTGTTGGGATCAATGGTTTTCGGAAGCGGCGAAATGTCTCGCTCTACAAGGCGCC 48709
|| || || |||||||| |||||| | || || ||| || ||| | |||||||||
Sbjct 2717 CTCATCTGCTGGGATCAGTGGTTTCCCGAGGCCGCGCGCTGCTGCGCCTTGCAAGGCGCC 2658
Query 48710 GATTTCATCGTGTACCCTACCGCGATCGGTACGGAGCCCGAGTTTCCCGACGGCGAAACA 48769
|| ||||| | ||||| ||||| || || | |||||| | ||| ||| | |
Sbjct 2657 GAGATCATCCTCTACCCCACCGCCATTGGCAGCGAGCCCCTGGCTCCGGACTACTCCTCC 2598
Query 48770 TATCTTCATTGGGCGAGAACAATCACGGGACACGCCGCCGCAACTGGCGTTCCAGTCATC 48829
|| || || ||| || | || || ||||||| ||||| ||||||| ||
Sbjct 2597 TACCTCCACTGGACGCGCGTCATGTGCGGGCACGCCGGCGCAAACATGATTCCAGTGGTC 2538
Query 48830 GTCGCGAATCGTATCGGTCACGAAGAACTCGGAGGC-AGCGAGATCGATTTTTACGGTGG 48888
||| | ||||| || || ||| || | |||| | | |||||| ||| ||||| ||
Sbjct 2537 GTCTCCAATCGCATTGG-CACCGAGTGCATGGAGTCGGGAGAGATCACTTTCTACGGCGG 2479
Query 48889 CAGTTTCATCGCGGACGGAACCGGAGCAGTCGTGACTCAAGTCGGAGGCG 48938
| |||||||| ||||| || ||||| |||||| |||| || |||| ||
Sbjct 2478 CTCGTTCATCGCCGACGGGACTGGAGCCGTCGTGGCTCAGGTGGGAGTCG 2429
>seq1043
Length=3368
Score = 87.8 bits (96), Expect = 4e-12
Identities = 202/303 (67%), Gaps = 5/303 (2%)
Strand=Plus/Minus
Query 330241 GAATCCATGACGAGGTTAACATACAGAAGTTGGACAACATTCAAAGGAGTTTCGCCTTTA 330300
|| ||||||| |||||| || ||| || || | || || | || || ||||| ||
Sbjct 558 GAGTCCATGATGAGGTTTACCCACAAGAGCTGCAGCACGTTGAGGGGGGTCTCGCCCTTG 499
Query 330301 GCAAATGCAGCGGTTGATACGACGATGAGAGCGATAATATTAATCGCCACCTGAAAAGAG 330360
| | || ||||| | |||||| ||| |||| | || || | | ||||||
Sbjct 498 GAGACGGCGGCGGTGAAGGCGACGACGAGGGCGACGACGTTGATGGTGAGCTGAAACTGC 439
Query 330361 ATAAACGATCTGATGTTGGACATGATAGAACGTCCCCATTTTACGCCATTGACAATCGAC 330420
| |||| | |||||||| | || || || ||||| |||| ||||| || |||
Sbjct 438 AAAAACTTGCGGATGTTGGCGAAGACGGAGCGCCCCCACAGCACGCTCTTGACGATGGAC 379
Query 330421 TCGAAATCATCGTTCAGGATGACGATGTCGGCTGATTCCTTTGCAATATCTGTTCCACTC 330480
||||| |||| ||||||||||||||| || | ||||| || | || || || | |
Sbjct 378 GAGAAATTGTCGTCCAGGATGACGATGTCCGCCGCCTCCTTGGCCACCTCGGTGCC-CGC 320
Query 330481 ----CCCATGGCACATCCAACGTCTGCCTCCTTAAGAGCCGGAGCATCGTTAGCACCATC 330536
|||||||| || ||||| |||||| || || || || ||||| | || ||
Sbjct 319 GAGGCCCATGGCCAGCCCCACGTCGCTCTCCTTGAGCGCGGGCGCGTCGTTGGTCCCGTC 260
Query 330537 GCC 330539
|||
Sbjct 259 GCC 257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102799935737100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |