Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq81 114 3e-20 seq905 102 2e-16 seq1043 87.8 4e-12 >seq81 Length=8194 Score = 114 bits (126), Expect = 3e-20 Identities = 268/397 (68%), Gaps = 12/397 (3%) Strand=Plus/Plus Query 298155 AGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCA 298214 ||||||||| |||||| ||||| | ||||| ||| || ||||||||||| | Sbjct 1032 AGTTCATGATGAGACCCTTGATGTGGGAGCCGTCGTGGTCCTGATCCGTCATGATCATGA 1091 Query 298215 CATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGGCCGAGAA 298274 ||| ||||| || |||| | ||| |||||| | || ||| || ||||| || | Sbjct 1092 GATGGCCGTAGCGCAGCGTGCCGCTGTTGTTGTACTCCTTGCCGTGCTGCAGGCCCAGGA 1151 Query 298275 TTTGTTTGAGCGCTGTGATT-TCTTCGTTCTTCGTGATGCTTGCCACGGATGCATCGCGG 298333 | || |||| | | ||| | || |||| || ||| ||| | || ||||| || Sbjct 1152 TCTGCTTGAT-GTTTTGAATCTCGGCGTTGCCCGAGATCTGAGCCGCCGAAGCATCTCGC 1210 Query 298334 ACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGAC 298393 || || | || || || || || ||||||||||| || | ||||| || ||||| ||| Sbjct 1211 ACGTTGAGGAGCTTGCCGCGGAGCGGGAACACTCCGTAGCGATCGCGGCCCACCACCGAC 1270 Query 298394 AGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCACATT 298453 || || || | || || ||| || || || ||||| || || ||||| |||||| Sbjct 1271 AGGCCCGCCACGGCCAGAGTCTTGGCCGAGTCTCCCTCGGTGAGGATGAGGGTGCAC--- 1327 Query 298454 TTGCTGTTATTCGTTCCAGCCCATG----TAGCATCGTTGAGTTTGGGAATTCCAGTCAC 298509 | | | | | | || |||| | | || |||| ||| |||||||| || ||| Sbjct 1328 TCGGAG-GAGTTGCGCCCGCCCGCGTCGTTTGCGTCGTCGAGCTTGGGAATGCCCAGCAC 1386 Query 298510 TCG-GATCTTCTTGGTACCGTCGGTCTTCTTCAGCTC 298545 || || | ||||| |||||| |||||||||||| Sbjct 1387 GCGAGAGC-GCTTGGCCCCGTCGCCCTTCTTCAGCTC 1422 Score = 105 bits (116), Expect = 1e-17 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 ||||| || || || || || ||| ||||| || ||||||| | || || ||||| Sbjct 311 GTGAAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGA 370 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 |||| ||||| || |||||| ||| ||| || ||| | ||||| || ||| |||| Sbjct 371 CCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACG 430 Query 297557 ATGGT-CCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACC 297615 ||||| ||| || || || | ||||| || || || ||||| | ||| || ||||| || Sbjct 431 ATGGTGCCCATG-AGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCC 489 Query 297616 GCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAA 297660 | ||| || ||||| | ||| || ||| ||||||||||| Sbjct 490 CGCCAGCTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGAA 534 >seq905 Length=3633 Score = 102 bits (112), Expect = 2e-16 Identities = 198/290 (68%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 48650 CTTATTTGTTGGGATCAATGGTTTTCGGAAGCGGCGAAATGTCTCGCTCTACAAGGCGCC 48709 || || || |||||||| |||||| | || || ||| || ||| | ||||||||| Sbjct 2717 CTCATCTGCTGGGATCAGTGGTTTCCCGAGGCCGCGCGCTGCTGCGCCTTGCAAGGCGCC 2658 Query 48710 GATTTCATCGTGTACCCTACCGCGATCGGTACGGAGCCCGAGTTTCCCGACGGCGAAACA 48769 || ||||| | ||||| ||||| || || | |||||| | ||| ||| | | Sbjct 2657 GAGATCATCCTCTACCCCACCGCCATTGGCAGCGAGCCCCTGGCTCCGGACTACTCCTCC 2598 Query 48770 TATCTTCATTGGGCGAGAACAATCACGGGACACGCCGCCGCAACTGGCGTTCCAGTCATC 48829 || || || ||| || | || || ||||||| ||||| ||||||| || Sbjct 2597 TACCTCCACTGGACGCGCGTCATGTGCGGGCACGCCGGCGCAAACATGATTCCAGTGGTC 2538 Query 48830 GTCGCGAATCGTATCGGTCACGAAGAACTCGGAGGC-AGCGAGATCGATTTTTACGGTGG 48888 ||| | ||||| || || ||| || | |||| | | |||||| ||| ||||| || Sbjct 2537 GTCTCCAATCGCATTGG-CACCGAGTGCATGGAGTCGGGAGAGATCACTTTCTACGGCGG 2479 Query 48889 CAGTTTCATCGCGGACGGAACCGGAGCAGTCGTGACTCAAGTCGGAGGCG 48938 | |||||||| ||||| || ||||| |||||| |||| || |||| || Sbjct 2478 CTCGTTCATCGCCGACGGGACTGGAGCCGTCGTGGCTCAGGTGGGAGTCG 2429 >seq1043 Length=3368 Score = 87.8 bits (96), Expect = 4e-12 Identities = 202/303 (67%), Gaps = 5/303 (2%) Strand=Plus/Minus Query 330241 GAATCCATGACGAGGTTAACATACAGAAGTTGGACAACATTCAAAGGAGTTTCGCCTTTA 330300 || ||||||| |||||| || ||| || || | || || | || || ||||| || Sbjct 558 GAGTCCATGATGAGGTTTACCCACAAGAGCTGCAGCACGTTGAGGGGGGTCTCGCCCTTG 499 Query 330301 GCAAATGCAGCGGTTGATACGACGATGAGAGCGATAATATTAATCGCCACCTGAAAAGAG 330360 | | || ||||| | |||||| ||| |||| | || || | | |||||| Sbjct 498 GAGACGGCGGCGGTGAAGGCGACGACGAGGGCGACGACGTTGATGGTGAGCTGAAACTGC 439 Query 330361 ATAAACGATCTGATGTTGGACATGATAGAACGTCCCCATTTTACGCCATTGACAATCGAC 330420 | |||| | |||||||| | || || || ||||| |||| ||||| || ||| Sbjct 438 AAAAACTTGCGGATGTTGGCGAAGACGGAGCGCCCCCACAGCACGCTCTTGACGATGGAC 379 Query 330421 TCGAAATCATCGTTCAGGATGACGATGTCGGCTGATTCCTTTGCAATATCTGTTCCACTC 330480 ||||| |||| ||||||||||||||| || | ||||| || | || || || | | Sbjct 378 GAGAAATTGTCGTCCAGGATGACGATGTCCGCCGCCTCCTTGGCCACCTCGGTGCC-CGC 320 Query 330481 ----CCCATGGCACATCCAACGTCTGCCTCCTTAAGAGCCGGAGCATCGTTAGCACCATC 330536 |||||||| || ||||| |||||| || || || || ||||| | || || Sbjct 319 GAGGCCCATGGCCAGCCCCACGTCGCTCTCCTTGAGCGCGGGCGCGTCGTTGGTCCCGTC 260 Query 330537 GCC 330539 ||| Sbjct 259 GCC 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102799935737100