Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq114 230 3e-55
seq81 163 3e-35
seq60 100 3e-16
>seq114
Length=7431
Score = 230 bits (254), Expect = 3e-55
Identities = 566/853 (66%), Gaps = 9/853 (1%)
Strand=Plus/Plus
Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523
|| || ||||| || || || || ||||| | ||||| || | |||||||| |
Sbjct 832 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACG 891
Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583
|| || || |||| || | ||| || ||||||| ||||| || || ||| | |
Sbjct 892 ATCTCGGTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCG 951
Query 114584 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 114643
|| || || |||||||| |||||||| ||||| ||||||||||| || | || | |||
Sbjct 952 TTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATG 1011
Query 114644 GCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGC--CCCTCCTCCTCGTACT 114701
|| ||| || | || || || || | | | || ||| ||||| |||||||
Sbjct 1012 GCGAACCA--CAGCTGCTGCGCGCGCATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACC 1069
Query 114702 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 114761
| |||||| | |||||||| ||| | || | || || || |||| | |
Sbjct 1070 GCGCGTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGG 1129
Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821
||||||| || ||| || || || |||| || |||||||| || ||||| |||||||
Sbjct 1130 GGCAGAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCC 1189
Query 114822 AGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 114881
| || | |||| || || || |||||| || || | || || || |||| |
Sbjct 1190 ACAGCCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGT 1249
Query 114882 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC 114941
||| ||||||| | ||||||||||| || |||||||||||||| | | ||||| |
Sbjct 1250 CCAGCCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGC 1309
Query 114942 G---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAA 114998
| | || |||||| || |||| || ||| | || || ||||| ||||| || |
Sbjct 1310 GCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCA 1369
Query 114999 TGATACCATCAGATTG-GCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCA 115057
| || | | | | ||| || || ||||| || ||| |||| | || ||
Sbjct 1370 CCACGCCGT-TGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTCG 1428
Query 115058 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 115117
|| ||||||| || || || || || | ||| ||| |||||||||| |||| ||
Sbjct 1429 TGCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTG 1488
Query 115118 CCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGT 115177
||||||| || ||||| ||| ||||| | || | | |||||||| || ||
Sbjct 1489 TCGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGC 1548
Query 115178 GGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGAC 115237
|| | || || || ||||||||||| || || | |||||| ||||| || ||| |
Sbjct 1549 GGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCTC 1608
Query 115238 ATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACC 115297
| | | ||| ||||| | | | | ||| ||| ||| || || ||||| ||
Sbjct 1609 AGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACACG 1668
Query 115298 CGCATAAACATGT 115310
||||| | |||||
Sbjct 1669 CGCATCAGCATGT 1681
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 113915 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 113974
||||| |||| ||| ||| | || ||||| ||| | ||||| ||||| ||||||||
Sbjct 235 AACTCGCCCGAGAGCACGCGGCGCACGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCG 294
Query 113975 TTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCA 114020
||||| |||||||| ||| |||| || ||||||||||| ||||
Sbjct 295 TTGTTGCCCAAGATCTGGCTGGTGCTCGCCGTGGGCATGGGCGCCA 340
>seq81
Length=8194
Score = 163 bits (180), Expect = 3e-35
Identities = 382/562 (68%), Gaps = 22/562 (4%)
Strand=Plus/Plus
Query 172409 GCTTCGGCCGATGTTGAAGTACCGAGACCCTTGTAGTACTTGATTTTCCATCC-CGGTTG 172467
|| ||||| | || || || |||||||||||||||||||||| |||| || ||| |
Sbjct 827 GCCTCGGCGGCGGTGGAGGTGCCGAGACCCTTGTAGTACTTGACGCTCCAGCCGCGGCGG 886
Query 172468 TC-----CATTGCCATACCA-GCTACGGAAAGCCGAATCGGTATAGAAA--GACTTTGAC 172519
|| | | || |||| || || | | | | |||| ||||| || | ||
Sbjct 887 TCGCGCTCTTCGC---ACCACGCCTCGTATTCCGGCA-CGGTGTAGAAGCTGA-TCTGCT 941
Query 172520 TGCGTACCCTTGGAAGCCTTGATGATTGGTGTCACCATTGAGACCACAAACCCC---AAC 172576
||| |||||||| ||| |||||||| || ||||| | |||| ||| ||| | |
Sbjct 942 CGCG-ACCCTTGGTAGCTTTGATGATGGGGGTCACAAACTCCACCAAAAATCCCGGCAGC 1000
Query 172577 TTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAA 172636
||||| || || | ||| ||| | |||| |||||||||||| ||||| ||
Sbjct 1001 TTGAGCAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAG 1060
Query 172637 CCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCT 172696
|| |||| ||| ||||||||| ||||| || | || ||||| ||| | |
Sbjct 1061 CCGTCGTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCGCTGTTG 1120
Query 172697 TGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAA-CTCTTGGTT 172755
| |||||||| || || || || |||| ||||| ||||| | ||||| ||| |||
Sbjct 1121 TTGTACTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGT-TTTGAATCTCGGCGTT 1179
Query 172756 TGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAA 172815
| || || ||| | |||||||| || || || ||| || ||||| |||||
Sbjct 1180 GCCCGAGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAA 1239
Query 172816 CACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGA 172875
||| |||||| |||| || || ||||| || || || || || || || ||||| || ||
Sbjct 1240 CACTCCGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGA 1299
Query 172876 ATCACCCTCCGTCACGATGAGCGTACACTTTCCAGA-TTGTGCCGTCCCCGCCTTGTTCG 172934
|| ||||| || | |||||| || |||| || ||| ||| ||||| | ||| |
Sbjct 1300 GTCTCCCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCC-CGCCCGCGTCGTTTG 1358
Query 172935 CATCGTCCAACTTGGGAATACC 172956
| ||||| | ||||||||| ||
Sbjct 1359 CGTCGTCGAGCTTGGGAATGCC 1380
Score = 95.1 bits (104), Expect = 1e-14
Identities = 203/302 (67%), Gaps = 6/302 (2%)
Strand=Plus/Plus
Query 171881 GTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGA 171940
||||||||||| | || | || || ||||| ||| || ||||| ||||| |||
Sbjct 311 GTGAAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGA 370
Query 171941 CCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACA 172000
|| ||| | ||| |||| ||||| || |||| |||| | ||| | ||
Sbjct 371 CCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACG 430
Query 172001 ATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCC 172060
|| || || ||||||| || ||||||||||| || ||| ||||| || || ||
Sbjct 431 ATGGTGCCCATGAGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCCC 490
Query 172061 GCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACC 172120
|||| ||| || ||||| || || | ||| ||||| | |||||| ||| ||| || |
Sbjct 491 GCCAGCTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGAAGCAGGCAAACAGGATC 550
Query 172121 TTTCTCTGTGAAGGCTTGAGGCCGT---CGGCCATGTGCGCGATGGAACGCTTCAAGTCT 172177
|| | ||| || ||||| |||| |||| || | |||||| |||| || |||
Sbjct 551 TTGCGCTGCCCGGGTTTGAGCCCGTCCACGGCGCTG---GGGATGGAGCGCTCCAGGTCG 607
Query 172178 GC 172179
||
Sbjct 608 GC 609
>seq60
Length=8765
Score = 100 bits (110), Expect = 3e-16
Identities = 118/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105
|||||| || ||| || ||||| ||||| |||||||| || || || ||| || ||
Sbjct 2752 GGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCC 2693
Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165
||||||||||| |||||||| | |||| | || | || || || |||||| ||
Sbjct 2692 GGGCATGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGAAGAAAAT 2633
Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205
|||||||| ||||| ||||| | || ||||| ||||||
Sbjct 2632 GCCCTCCACGCACGCAAACGCCACCAGGCGCTCCGCAAAG 2593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597311292431280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |