Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq114 230 3e-55 seq81 163 3e-35 seq60 100 3e-16 >seq114 Length=7431 Score = 230 bits (254), Expect = 3e-55 Identities = 566/853 (66%), Gaps = 9/853 (1%) Strand=Plus/Plus Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523 || || ||||| || || || || ||||| | ||||| || | |||||||| | Sbjct 832 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACG 891 Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583 || || || |||| || | ||| || ||||||| ||||| || || ||| | | Sbjct 892 ATCTCGGTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCG 951 Query 114584 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 114643 || || || |||||||| |||||||| ||||| ||||||||||| || | || | ||| Sbjct 952 TTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATG 1011 Query 114644 GCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGC--CCCTCCTCCTCGTACT 114701 || ||| || | || || || || | | | || ||| ||||| ||||||| Sbjct 1012 GCGAACCA--CAGCTGCTGCGCGCGCATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACC 1069 Query 114702 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 114761 | |||||| | |||||||| ||| | || | || || || |||| | | Sbjct 1070 GCGCGTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGG 1129 Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821 ||||||| || ||| || || || |||| || |||||||| || ||||| ||||||| Sbjct 1130 GGCAGAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCC 1189 Query 114822 AGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 114881 | || | |||| || || || |||||| || || | || || || |||| | Sbjct 1190 ACAGCCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGT 1249 Query 114882 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC 114941 ||| ||||||| | ||||||||||| || |||||||||||||| | | ||||| | Sbjct 1250 CCAGCCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGC 1309 Query 114942 G---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAA 114998 | | || |||||| || |||| || ||| | || || ||||| ||||| || | Sbjct 1310 GCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCA 1369 Query 114999 TGATACCATCAGATTG-GCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCA 115057 | || | | | | ||| || || ||||| || ||| |||| | || || Sbjct 1370 CCACGCCGT-TGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTCG 1428 Query 115058 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 115117 || ||||||| || || || || || | ||| ||| |||||||||| |||| || Sbjct 1429 TGCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTG 1488 Query 115118 CCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGT 115177 ||||||| || ||||| ||| ||||| | || | | |||||||| || || Sbjct 1489 TCGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGC 1548 Query 115178 GGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGAC 115237 || | || || || ||||||||||| || || | |||||| ||||| || ||| | Sbjct 1549 GGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCTC 1608 Query 115238 ATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACC 115297 | | | ||| ||||| | | | | ||| ||| ||| || || ||||| || Sbjct 1609 AGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACACG 1668 Query 115298 CGCATAAACATGT 115310 ||||| | ||||| Sbjct 1669 CGCATCAGCATGT 1681 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 113915 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 113974 ||||| |||| ||| ||| | || ||||| ||| | ||||| ||||| |||||||| Sbjct 235 AACTCGCCCGAGAGCACGCGGCGCACGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCG 294 Query 113975 TTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCA 114020 ||||| |||||||| ||| |||| || ||||||||||| |||| Sbjct 295 TTGTTGCCCAAGATCTGGCTGGTGCTCGCCGTGGGCATGGGCGCCA 340 >seq81 Length=8194 Score = 163 bits (180), Expect = 3e-35 Identities = 382/562 (68%), Gaps = 22/562 (4%) Strand=Plus/Plus Query 172409 GCTTCGGCCGATGTTGAAGTACCGAGACCCTTGTAGTACTTGATTTTCCATCC-CGGTTG 172467 || ||||| | || || || |||||||||||||||||||||| |||| || ||| | Sbjct 827 GCCTCGGCGGCGGTGGAGGTGCCGAGACCCTTGTAGTACTTGACGCTCCAGCCGCGGCGG 886 Query 172468 TC-----CATTGCCATACCA-GCTACGGAAAGCCGAATCGGTATAGAAA--GACTTTGAC 172519 || | | || |||| || || | | | | |||| ||||| || | || Sbjct 887 TCGCGCTCTTCGC---ACCACGCCTCGTATTCCGGCA-CGGTGTAGAAGCTGA-TCTGCT 941 Query 172520 TGCGTACCCTTGGAAGCCTTGATGATTGGTGTCACCATTGAGACCACAAACCCC---AAC 172576 ||| |||||||| ||| |||||||| || ||||| | |||| ||| ||| | | Sbjct 942 CGCG-ACCCTTGGTAGCTTTGATGATGGGGGTCACAAACTCCACCAAAAATCCCGGCAGC 1000 Query 172577 TTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAA 172636 ||||| || || | ||| ||| | |||| |||||||||||| ||||| || Sbjct 1001 TTGAGCAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAG 1060 Query 172637 CCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCT 172696 || |||| ||| ||||||||| ||||| || | || ||||| ||| | | Sbjct 1061 CCGTCGTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCGCTGTTG 1120 Query 172697 TGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAA-CTCTTGGTT 172755 | |||||||| || || || || |||| ||||| ||||| | ||||| ||| ||| Sbjct 1121 TTGTACTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGT-TTTGAATCTCGGCGTT 1179 Query 172756 TGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAA 172815 | || || ||| | |||||||| || || || ||| || ||||| ||||| Sbjct 1180 GCCCGAGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAA 1239 Query 172816 CACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGA 172875 ||| |||||| |||| || || ||||| || || || || || || || ||||| || || Sbjct 1240 CACTCCGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGA 1299 Query 172876 ATCACCCTCCGTCACGATGAGCGTACACTTTCCAGA-TTGTGCCGTCCCCGCCTTGTTCG 172934 || ||||| || | |||||| || |||| || ||| ||| ||||| | ||| | Sbjct 1300 GTCTCCCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCC-CGCCCGCGTCGTTTG 1358 Query 172935 CATCGTCCAACTTGGGAATACC 172956 | ||||| | ||||||||| || Sbjct 1359 CGTCGTCGAGCTTGGGAATGCC 1380 Score = 95.1 bits (104), Expect = 1e-14 Identities = 203/302 (67%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 171881 GTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGA 171940 ||||||||||| | || | || || ||||| ||| || ||||| ||||| ||| Sbjct 311 GTGAAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGA 370 Query 171941 CCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACA 172000 || ||| | ||| |||| ||||| || |||| |||| | ||| | || Sbjct 371 CCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACG 430 Query 172001 ATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCC 172060 || || || ||||||| || ||||||||||| || ||| ||||| || || || Sbjct 431 ATGGTGCCCATGAGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCCC 490 Query 172061 GCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACC 172120 |||| ||| || ||||| || || | ||| ||||| | |||||| ||| ||| || | Sbjct 491 GCCAGCTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGAAGCAGGCAAACAGGATC 550 Query 172121 TTTCTCTGTGAAGGCTTGAGGCCGT---CGGCCATGTGCGCGATGGAACGCTTCAAGTCT 172177 || | ||| || ||||| |||| |||| || | |||||| |||| || ||| Sbjct 551 TTGCGCTGCCCGGGTTTGAGCCCGTCCACGGCGCTG---GGGATGGAGCGCTCCAGGTCG 607 Query 172178 GC 172179 || Sbjct 608 GC 609 >seq60 Length=8765 Score = 100 bits (110), Expect = 3e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| || ||||| ||||| |||||||| || || || ||| || || Sbjct 2752 GGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCC 2693 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| |||||||| | |||| | || | || || || |||||| || Sbjct 2692 GGGCATGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGAAGAAAAT 2633 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 |||||||| ||||| ||||| | || ||||| |||||| Sbjct 2632 GCCCTCCACGCACGCAAACGCCACCAGGCGCTCCGCAAAG 2593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597311292431280