Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq152 118 5e-22 >seq152 Length=7042 Score = 118 bits (130), Expect = 5e-22 Identities = 256/377 (68%), Gaps = 7/377 (2%) Strand=Plus/Plus Query 65934 CTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGT 65993 ||||| || ||||| || || || || || |||||| | |||||||||||||| Sbjct 4515 CTGGATGCGGCTCTGGGG---GGCGGCTACCCCGTGGGCCGCATCGTGGAGATCTACGGC 4571 Query 65994 CCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCC 66053 || ||||| |||||| | ||| || || ||||| ||||| | | |||| | Sbjct 4572 CCCGAGTCGAGCGGGAAGACGACGCTGGCGCTGCACGCCATGGCCGAGGTGCAGAGACGC 4631 Query 66054 GGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCG 66113 || ||||| || | ||||||||||| || | ||||||| | | || |||| || Sbjct 4632 GGAGGCAAGTGCGTTTTGATCGACGCCGAGCACGCGTTCGACCCGGTATTCG-CGCGTCG 4690 Query 66114 CTCGGGG-TGGATGTCGACAATCTCGTGGTTGTG-CAGCCAGACACTGGCGAGCAGGCCC 66171 | ||||| |||| || ||| ||| | || | ||||| ||| |||||| ||| | Sbjct 4691 CGCGGGGCTGGACGTGGACGCGCTC-TACCTGAGCCAGCCCGACTGCGGCGAGGCGGCGC 4749 Query 66172 TGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTG 66231 ||||||||| ||| || || || || | || ||| ||| || ||||| | Sbjct 4750 TGGAGATCGCGGACAACCTGATCCGCTCCGGGGGCGTGGACATGGTCGCCGTCGACTCGG 4809 Query 66232 TGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCC 66291 ||||||| ||||| ||||| || ||| | || || || |||||| | ||| || ||| Sbjct 4810 TGGCGGCGCTGGTCCCGCGAGCCGAGATAGAGGGCGAGATCGGGCAGCTGCAGGTGGGCG 4869 Query 66292 TGCATGCCCGCCTGATG 66308 || || ||||||||| Sbjct 4870 CCCAGGCGCGCCTGATG 4886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242453656358072