Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq114 334 8e-87 >seq114 Length=7431 Score = 334 bits (370), Expect = 8e-87 Identities = 521/742 (70%), Gaps = 2/742 (0%) Strand=Plus/Minus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 ||||| || ||||||||||| ||||| || ||| || || || || || | Sbjct 1580 CCGACGCTCTTCAACGCGGGCACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCC 1521 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | |||| |||| |||| || || | ||||| |||||||| || ||| ||||| Sbjct 1520 ATGAAGGGCGACAGCATCGAGGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGC 1461 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || |||||| || |||||| | | |||||| | || |||| ||| || |||||| Sbjct 1460 AAGAGCGCGGGCGGCATCGGGCTGCACATGCACGACATCCGCGCCACGGGGTCGTACATC 1401 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 || || ||||| ||||| ||||||| | || || ||||| || || |||||| || || Sbjct 1400 CGGGGCACCAACGGCACGAGCAACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACG 1341 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 || || |||||||||||||| || || | | | ||||| | || ||||| || || ||| Sbjct 1340 GCTCGGTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAG 1281 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 |||||||||||||||||| || | | |||||||| |||||||||||||| || | Sbjct 1280 CCCTGGCACGCGGACGTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAG 1221 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | ||| | ||||| ||||||| || ||| | || ||||| |||||||| |||||| Sbjct 1220 GCTCGCGCCCGCGACCTGTTCTACGGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTC 1161 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 ||| || ||||| || || || ||||| || || || ||| | ||||| Sbjct 1160 GAGGCGGACGGGCAGTGGAGCCTGTTCTGCCCCAACGAGGCGCCGGGCCTGGCGGACGTG 1101 Query 94378 TGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAGGCCAGGAA 94436 || || | ||||| | || || || |||| | ||| ||||| || | || Sbjct 1100 TGGGGCCCCGAGTTTGAGTCGCTCTACGCGCGGTACG-AGCGCGAGGGCCGCGCGCGCAA 1042 Query 94437 GGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTAC 94496 | ||| || | |||||||| || |||| | ||| ||||||||| || Sbjct 1041 GACGATGCGCGCGCAGCAGCTGTGGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCAC 982 Query 94497 GCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGT 94556 ||||||||| ||| ||||||| | |||||||||| |||||||||| |||| || Sbjct 981 GCCCTACATGCTGTACAAGGACGCCTGCAACGCCAAGAGCAACCAGCAGAACCTGGGCAC 922 Query 94557 GATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGC 94616 ||||||| || || |||||||||||||| |||||||| || | || ||||||| || Sbjct 921 GATCAAGTGCAGCAACCTGTGCACCGAGATCGTCGAGTACACGGCCCCCGACGAGACGGC 862 Query 94617 TGTGTGTAACCTGGGCTCCATC 94638 ||||| ||||| | ||| ||| Sbjct 861 CGTGTGCAACCTCGCCTCGATC 840 Score = 187 bits (206), Expect = 2e-42 Identities = 465/697 (67%), Gaps = 13/697 (2%) Strand=Plus/Minus Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 ||||||||| | | |||||| ||| |||||||||||| | ||| ||| | ||| Sbjct 713 AACCTGAACCGCATCATCGACGTCAACCACTACCCCGTCCCCGCGGCCGAGCGCAGCAAC 654 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 || ||| || ||||||||| | ||||| ||||| | || ||||| | | || || Sbjct 653 CTCCGGCACCGCCCCATCGGCCTGGGCGTGCAGGGCCTGGCCGACGCCTTCATCCTGCTG 594 Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 | |||||| ||| ||| || ||| | || |||| ||||| | | | Sbjct 593 GGCATGCCCTTTGACGGGCCCGAGGCCGCGCAGCTCAACCGCGACATCTTCGAGACCGTC 534 Query 94909 TATTACGGGGCCATGAAACAATCCGTCC-ACTTGGCCAGATCGGACGGCGGGCCACACGA 94967 || |||| || || || ||| | | | ||| | || || |||||| |||| Sbjct 533 TACTACGCCGCGCTGCG-CACCTCGTGCGAGCTCGCCCGC-CG--CGACGGGCCGTACGA 478 Query 94968 ATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027 | | | ||| || || | ||||||| | ||| |||||| ||||| |||| Sbjct 477 GACCTACGCCGGGTCTCCGGCGTCCCAGGGCAAGCTGCAGCACGACCTGTGGGGCGTGAC 418 Query 95028 GCCCTCG---GGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGT 95084 |||| | || | || |||||||| || || ||||| || | | ||||| | Sbjct 417 GCCCCAGAGCGGGCGGTGGGACTGGGAGGCCCTGCGCGCGACCGTGCGCGAGCACGGGCT 358 Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144 | ||| ||||||| ||||| |||||||||||||| ||| |||||| | ||||| Sbjct 357 GCGCAACTCGCTGCTGGTGGCGCCCATGCCCACGGCGAGCACCAGCCAGATCTTGGGCAA 298 Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204 |||||||| ||||| |||| |||| |||| | ||| | || |||||| | || || Sbjct 297 CAACGAGTGCTTCGAGCCCTACACCAGCAACATCTACGTGCGCCGCGTGCTCTCGGGCGA 238 Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGA 95264 ||| |||| ||||| | ||||| || | ||||| ||| ||||| | |||| | Sbjct 237 GTTCACCGTGGTCAACCACCACCTGCTGCACGACCTCACGCGCCTGGGGCTCTGGGACGC 178 Query 95265 CAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC-AAATAC 95323 | | |||||||| | ||| | ||| ||||| ||| | ||| | | | | Sbjct 177 CGACCTCAAGAACGAGCTGGT---GGCCCACGGC-GGGTCGGTGGCGGCCCTCGACGTGC 122 Query 95324 CGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCG 95383 | |||||| |||||| || |||||||| |||||||||||| |||||||||| | ||| Sbjct 121 CCGAGGACCTCAAGGGCCTGTACAAGACGGTGTGGGAGATCAAGCAGCGCGTGCTGGTCG 62 Query 95384 ACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAG 95420 || || |||| |||||| ||| |||| |||||| Sbjct 61 ACATGGCCGCCGACCGCGGCGCCTACATCGACCAGAG 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494688161229360