Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq114 334 8e-87
>seq114
Length=7431
Score = 334 bits (370), Expect = 8e-87
Identities = 521/742 (70%), Gaps = 2/742 (0%)
Strand=Plus/Minus
Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957
||||| || ||||||||||| ||||| || ||| || || || || || |
Sbjct 1580 CCGACGCTCTTCAACGCGGGCACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCC 1521
Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017
| |||| |||| |||| || || | ||||| |||||||| || ||| |||||
Sbjct 1520 ATGAAGGGCGACAGCATCGAGGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGC 1461
Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077
|| |||||| || |||||| | | |||||| | || |||| ||| || ||||||
Sbjct 1460 AAGAGCGCGGGCGGCATCGGGCTGCACATGCACGACATCCGCGCCACGGGGTCGTACATC 1401
Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137
|| || ||||| ||||| ||||||| | || || ||||| || || |||||| || ||
Sbjct 1400 CGGGGCACCAACGGCACGAGCAACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACG 1341
Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197
|| || |||||||||||||| || || | | | ||||| | || ||||| || || |||
Sbjct 1340 GCTCGGTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAG 1281
Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257
|||||||||||||||||| || | | |||||||| |||||||||||||| || |
Sbjct 1280 CCCTGGCACGCGGACGTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAG 1221
Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317
| | ||| | ||||| ||||||| || ||| | || ||||| |||||||| ||||||
Sbjct 1220 GCTCGCGCCCGCGACCTGTTCTACGGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTC 1161
Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377
||| || ||||| || || || ||||| || || || ||| | |||||
Sbjct 1160 GAGGCGGACGGGCAGTGGAGCCTGTTCTGCCCCAACGAGGCGCCGGGCCTGGCGGACGTG 1101
Query 94378 TGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAGGCCAGGAA 94436
|| || | ||||| | || || || |||| | ||| ||||| || | ||
Sbjct 1100 TGGGGCCCCGAGTTTGAGTCGCTCTACGCGCGGTACG-AGCGCGAGGGCCGCGCGCGCAA 1042
Query 94437 GGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTAC 94496
| ||| || | |||||||| || |||| | ||| ||||||||| ||
Sbjct 1041 GACGATGCGCGCGCAGCAGCTGTGGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCAC 982
Query 94497 GCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGT 94556
||||||||| ||| ||||||| | |||||||||| |||||||||| |||| ||
Sbjct 981 GCCCTACATGCTGTACAAGGACGCCTGCAACGCCAAGAGCAACCAGCAGAACCTGGGCAC 922
Query 94557 GATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGC 94616
||||||| || || |||||||||||||| |||||||| || | || ||||||| ||
Sbjct 921 GATCAAGTGCAGCAACCTGTGCACCGAGATCGTCGAGTACACGGCCCCCGACGAGACGGC 862
Query 94617 TGTGTGTAACCTGGGCTCCATC 94638
||||| ||||| | ||| |||
Sbjct 861 CGTGTGCAACCTCGCCTCGATC 840
Score = 187 bits (206), Expect = 2e-42
Identities = 465/697 (67%), Gaps = 13/697 (2%)
Strand=Plus/Minus
Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788
||||||||| | | |||||| ||| |||||||||||| | ||| ||| | |||
Sbjct 713 AACCTGAACCGCATCATCGACGTCAACCACTACCCCGTCCCCGCGGCCGAGCGCAGCAAC 654
Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848
|| ||| || ||||||||| | ||||| ||||| | || ||||| | | || ||
Sbjct 653 CTCCGGCACCGCCCCATCGGCCTGGGCGTGCAGGGCCTGGCCGACGCCTTCATCCTGCTG 594
Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908
| |||||| ||| ||| || ||| | || |||| ||||| | | |
Sbjct 593 GGCATGCCCTTTGACGGGCCCGAGGCCGCGCAGCTCAACCGCGACATCTTCGAGACCGTC 534
Query 94909 TATTACGGGGCCATGAAACAATCCGTCC-ACTTGGCCAGATCGGACGGCGGGCCACACGA 94967
|| |||| || || || ||| | | | ||| | || || |||||| ||||
Sbjct 533 TACTACGCCGCGCTGCG-CACCTCGTGCGAGCTCGCCCGC-CG--CGACGGGCCGTACGA 478
Query 94968 ATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027
| | | ||| || || | ||||||| | ||| |||||| ||||| ||||
Sbjct 477 GACCTACGCCGGGTCTCCGGCGTCCCAGGGCAAGCTGCAGCACGACCTGTGGGGCGTGAC 418
Query 95028 GCCCTCG---GGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGT 95084
|||| | || | || |||||||| || || ||||| || | | ||||| |
Sbjct 417 GCCCCAGAGCGGGCGGTGGGACTGGGAGGCCCTGCGCGCGACCGTGCGCGAGCACGGGCT 358
Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144
| ||| ||||||| ||||| |||||||||||||| ||| |||||| | |||||
Sbjct 357 GCGCAACTCGCTGCTGGTGGCGCCCATGCCCACGGCGAGCACCAGCCAGATCTTGGGCAA 298
Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204
|||||||| ||||| |||| |||| |||| | ||| | || |||||| | || ||
Sbjct 297 CAACGAGTGCTTCGAGCCCTACACCAGCAACATCTACGTGCGCCGCGTGCTCTCGGGCGA 238
Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGA 95264
||| |||| ||||| | ||||| || | ||||| ||| ||||| | |||| |
Sbjct 237 GTTCACCGTGGTCAACCACCACCTGCTGCACGACCTCACGCGCCTGGGGCTCTGGGACGC 178
Query 95265 CAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC-AAATAC 95323
| | |||||||| | ||| | ||| ||||| ||| | ||| | | | |
Sbjct 177 CGACCTCAAGAACGAGCTGGT---GGCCCACGGC-GGGTCGGTGGCGGCCCTCGACGTGC 122
Query 95324 CGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCG 95383
| |||||| |||||| || |||||||| |||||||||||| |||||||||| | |||
Sbjct 121 CCGAGGACCTCAAGGGCCTGTACAAGACGGTGTGGGAGATCAAGCAGCGCGTGCTGGTCG 62
Query 95384 ACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAG 95420
|| || |||| |||||| ||| |||| ||||||
Sbjct 61 ACATGGCCGCCGACCGCGGCGCCTACATCGACCAGAG 25
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494688161229360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |