Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq114 259 5e-64 seq60 147 2e-30 seq2724 102 8e-17 >seq114 Length=7431 Score = 259 bits (286), Expect = 5e-64 Identities = 586/867 (68%), Gaps = 23/867 (3%) Strand=Plus/Plus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656 || || || || || || || ||||||||||| |||| | | |||||| ||||||||| Sbjct 838 GCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCG 897 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 | ||| ||||||||||| || || ||||| || ||||| ||||| ||| ||||| Sbjct 898 GTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAG 957 Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAAC 153773 ||||| ||| | |||||||| || ||| ||||| |||| || | || ||| Sbjct 958 GCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAAC 1017 Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833 | ||| | |||||| |||| | || || ||||||||||| |||||| ||| || Sbjct 1018 C---ACAGCTGCTGCGCGCGCATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACCGCGCG 1074 Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893 || || |||||||||| ||| | ||| || ||||| || || | || || Sbjct 1075 TAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCAG 1134 Query 153894 ATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953 | ||| |||| |||| || | |||||| ||| ||||| || || | ||| ||| Sbjct 1135 AACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGC 1194 Query 153954 GCGTACATGAGGTCGCGCGC-CTTGCAATCCTCCGCGCC---CATGTTGCGTTTCAGATT 154009 |||| | |||||||| || | || |||||| ||| | ||||| ||| | Sbjct 1195 CCGTAGAACAGGTCGCGGGCGCGAGC-CTCCTCCTTGCCGTGGTTCTTGCG---CAGGTC 1250 Query 154010 GAG-CACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTAC 154068 || || | || | ||| ||||||||||| || | ||| || || | ||| || || | Sbjct 1251 CAGCCAGTCCAT-CACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGC 1309 Query 154069 GCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTT 154125 |||| |||||||| || |||| || || | | |||||| ||||||| |||||| Sbjct 1310 GCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCA 1369 Query 154126 CCAGGCCGCTTGC-GGTGCCGTTGGTCGAATTGATCTTGCTGCCGCG-GGCGCGCACTTG 154183 ||| |||| |||| ||||||||||| ||| | | || || |||||| | | Sbjct 1370 CCACGCCG-TTGCTCGTGCCGTTGGTGCCCCGGAT-GTACGACCCCGTGGCGCGGATGTC 1427 Query 154184 ATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGT 154243 |||| || | || |||||||| || ||| ||||| ||||| || ||||| Sbjct 1428 GTGCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGT 1487 Query 154244 CCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTG 154303 ||||||||| |||||||| ||| | | | | | ||| || || | || || Sbjct 1488 GTCGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTG 1547 Query 154304 CGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCT 154363 ||| | | || ||||| ||||| || || ||||||||| ||| ||||| Sbjct 1548 CGGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCT 1607 Query 154364 CATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGAC 154423 || || | ||||||| ||||| || || | || || ||| ||||| | || || Sbjct 1608 CAGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACAC 1667 Query 154424 GCGCATGAGCATGTGCTGCGGACGTTC 154450 |||||| ||||||||||||||||| || Sbjct 1668 GCGCATCAGCATGTGCTGCGGACGCTC 1694 Score = 125 bits (138), Expect = 7e-24 Identities = 354/532 (67%), Gaps = 15/532 (3%) Strand=Plus/Plus Query 153007 TGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCA 153066 ||||||| | | || || ||||||||||| |||||||||| | ||| || | || Sbjct 200 TGAGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAACTCGCCCGAGAGCACGCGGCGCA 259 Query 153067 AATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGG 153126 || | ||||| ||| | || || ||| | ||||| ||||| | || || ||| Sbjct 260 CGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGCTGGTGC 319 Query 153127 TTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATG-TCG 153185 | || || |||||| |||||||| || || || |||| |||||| | || | | ||| Sbjct 320 TCGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCAGCCCGTGCTCGCGCACGGTCG 379 Query 153186 TCCTTCAACGCCTGCCAATCCCACAGCGCCGAC---GGTGTCGCGTTCCACATGTCGTAC 153242 | || |||| ||| |||||| || | | || ||| || ||||| ||||| | Sbjct 380 CGCG-CAGGGCCTCCCAGTCCCACCGCCCGCTCTGGGGCGTCACGCCCCACAGGTCGTGC 438 Query 153243 TGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGG 153302 || | | || | || ||| ||||| | || ||| |||||||| || Sbjct 439 TGCAGCTTGCCCTGGGACGCCGGAGACCCGGCGTAGGTCTCGTACGGCCCGTCGCGGCGG 498 Query 153303 GCCAGTTCGCAGCTAGCCTCG-AGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATT 153361 || || ||||| | || || |||||| | ||||| | ||| ||| ||| | || Sbjct 499 GCGAGCTCGCA-CGAGGTGCGCAGCGCGGCGTAGTAGACGGTCTCGAAGATGTCGCGGTT 557 Query 153362 GAGAACGGCCGCTTCTTCGCTCTCGT---ACGGCATGCGCAGCAGCACAAAGGCGTCGGC 153418 ||| | || || | ||| | ||| | ||||||| |||||| | ||||||||||| Sbjct 558 GAG--CTGC-GCGGCCTCGGGCCCGTCAAAGGGCATGCCCAGCAGGATGAAGGCGTCGGC 614 Query 153419 CAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-G 153477 ||| ||||| | || | ||||||||| || ||| ||||||||| |||| | | | Sbjct 615 CAGGCCCTGCACGCCCAGGCCGATGGGGCGGTGCCGGAGGTTGCTGCG-CTCGGCCGCGG 673 Query 153478 CTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCAC 153529 | ||| ||||| ||| ||||| || ||| ||||||||| | |||| Sbjct 674 GGACGGGGTAGTGGTTGACGTCGATGATGCGGTTCAGGTTGCGCGTCGCCAC 725 >seq60 Length=8765 Score = 147 bits (162), Expect = 2e-30 Identities = 306/454 (67%), Gaps = 19/454 (4%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || |||||| ||||||| || || || |||||| | || || ||||||||| | Sbjct 2597 GCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTTCTGC 2656 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 |||||| | | || | | || | ||||||||||| || || ||||||| | Sbjct 2657 TCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCAACGAGCTC 2716 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACTACAAGACGCGC 52568 || || || || || || |||||||| |||||||| ||||| ||||| || | | || Sbjct 2717 ATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTACTCCATG-CTCGA 2775 Query 52569 GTGACCGAAAAATTGGATTCGGACACGATC--CTGAGCATGTTCAAGG---AGGCGGTGG 52623 | ||| ||| ||| | |||| | | || || |||| |||| Sbjct 2776 GCACCCGC----------TCGCCATCGAGCGTCTGAACCAGCTCGTGGGCGAGGCCGTGG 2825 Query 52624 CTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGC 52683 ||||| ||||||||| | | || |||||||| || || | |||||||||| Sbjct 2826 AAATCGAGAAGGAGTTTGTCTGCGATGCCCTGCCGGTGGATCTCATCGGCATGAACGGCA 2885 Query 52684 AGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGC 52743 || ||| || ||||||| ||||||||| || || ||| | || || || || Sbjct 2886 AGCTGATGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGCTCGTCGCCCTGGGTGCGC 2945 Query 52744 CAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCA 52803 | ||| || |||||| ||||||||| || | ||| | ||| ||||| |||||| Sbjct 2946 CCAAGCTCTACAACGCCACCAATCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCA 3005 Query 52804 AGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||||||||||| ||||| || || Sbjct 3006 AGACCAACTTTTTCGAGAAGCGCGTCGGAGACTA 3039 >seq2724 Length=1646 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| ||| | || | ||| | | | |||||||| || |||||||||||| Sbjct 1308 GCCGCCGCGCAGACGGAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1367 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || ||||| || || || || | | || || ||||| ||||| ||||| Sbjct 1368 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGG 1427 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | |||||||| Sbjct 1428 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCAC 1487 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | || || || ||||| || || || || ||||||||| Sbjct 1488 CTCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 1536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496227252215520