Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq114 259 5e-64
seq60 147 2e-30
seq2724 102 8e-17
>seq114
Length=7431
Score = 259 bits (286), Expect = 5e-64
Identities = 586/867 (68%), Gaps = 23/867 (3%)
Strand=Plus/Plus
Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656
|| || || || || || || ||||||||||| |||| | | |||||| |||||||||
Sbjct 838 GCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCG 897
Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716
| ||| ||||||||||| || || ||||| || ||||| ||||| ||| |||||
Sbjct 898 GTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAG 957
Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAAC 153773
||||| ||| | |||||||| || ||| ||||| |||| || | || |||
Sbjct 958 GCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAAC 1017
Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833
| ||| | |||||| |||| | || || ||||||||||| |||||| ||| ||
Sbjct 1018 C---ACAGCTGCTGCGCGCGCATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACCGCGCG 1074
Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893
|| || |||||||||| ||| | ||| || ||||| || || | || ||
Sbjct 1075 TAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCAG 1134
Query 153894 ATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953
| ||| |||| |||| || | |||||| ||| ||||| || || | ||| |||
Sbjct 1135 AACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGC 1194
Query 153954 GCGTACATGAGGTCGCGCGC-CTTGCAATCCTCCGCGCC---CATGTTGCGTTTCAGATT 154009
|||| | |||||||| || | || |||||| ||| | ||||| ||| |
Sbjct 1195 CCGTAGAACAGGTCGCGGGCGCGAGC-CTCCTCCTTGCCGTGGTTCTTGCG---CAGGTC 1250
Query 154010 GAG-CACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTAC 154068
|| || | || | ||| ||||||||||| || | ||| || || | ||| || || |
Sbjct 1251 CAGCCAGTCCAT-CACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGC 1309
Query 154069 GCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTT 154125
|||| |||||||| || |||| || || | | |||||| ||||||| ||||||
Sbjct 1310 GCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCA 1369
Query 154126 CCAGGCCGCTTGC-GGTGCCGTTGGTCGAATTGATCTTGCTGCCGCG-GGCGCGCACTTG 154183
||| |||| |||| ||||||||||| ||| | | || || |||||| | |
Sbjct 1370 CCACGCCG-TTGCTCGTGCCGTTGGTGCCCCGGAT-GTACGACCCCGTGGCGCGGATGTC 1427
Query 154184 ATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGT 154243
|||| || | || |||||||| || ||| ||||| ||||| || |||||
Sbjct 1428 GTGCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGT 1487
Query 154244 CCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTG 154303
||||||||| |||||||| ||| | | | | | ||| || || | || ||
Sbjct 1488 GTCGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTG 1547
Query 154304 CGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCT 154363
||| | | || ||||| ||||| || || ||||||||| ||| |||||
Sbjct 1548 CGGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCT 1607
Query 154364 CATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGAC 154423
|| || | ||||||| ||||| || || | || || ||| ||||| | || ||
Sbjct 1608 CAGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACAC 1667
Query 154424 GCGCATGAGCATGTGCTGCGGACGTTC 154450
|||||| ||||||||||||||||| ||
Sbjct 1668 GCGCATCAGCATGTGCTGCGGACGCTC 1694
Score = 125 bits (138), Expect = 7e-24
Identities = 354/532 (67%), Gaps = 15/532 (3%)
Strand=Plus/Plus
Query 153007 TGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCA 153066
||||||| | | || || ||||||||||| |||||||||| | ||| || | ||
Sbjct 200 TGAGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAACTCGCCCGAGAGCACGCGGCGCA 259
Query 153067 AATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGG 153126
|| | ||||| ||| | || || ||| | ||||| ||||| | || || |||
Sbjct 260 CGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGCTGGTGC 319
Query 153127 TTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATG-TCG 153185
| || || |||||| |||||||| || || || |||| |||||| | || | | |||
Sbjct 320 TCGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCAGCCCGTGCTCGCGCACGGTCG 379
Query 153186 TCCTTCAACGCCTGCCAATCCCACAGCGCCGAC---GGTGTCGCGTTCCACATGTCGTAC 153242
| || |||| ||| |||||| || | | || ||| || ||||| ||||| |
Sbjct 380 CGCG-CAGGGCCTCCCAGTCCCACCGCCCGCTCTGGGGCGTCACGCCCCACAGGTCGTGC 438
Query 153243 TGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGG 153302
|| | | || | || ||| ||||| | || ||| |||||||| ||
Sbjct 439 TGCAGCTTGCCCTGGGACGCCGGAGACCCGGCGTAGGTCTCGTACGGCCCGTCGCGGCGG 498
Query 153303 GCCAGTTCGCAGCTAGCCTCG-AGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATT 153361
|| || ||||| | || || |||||| | ||||| | ||| ||| ||| | ||
Sbjct 499 GCGAGCTCGCA-CGAGGTGCGCAGCGCGGCGTAGTAGACGGTCTCGAAGATGTCGCGGTT 557
Query 153362 GAGAACGGCCGCTTCTTCGCTCTCGT---ACGGCATGCGCAGCAGCACAAAGGCGTCGGC 153418
||| | || || | ||| | ||| | ||||||| |||||| | |||||||||||
Sbjct 558 GAG--CTGC-GCGGCCTCGGGCCCGTCAAAGGGCATGCCCAGCAGGATGAAGGCGTCGGC 614
Query 153419 CAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-G 153477
||| ||||| | || | ||||||||| || ||| ||||||||| |||| | | |
Sbjct 615 CAGGCCCTGCACGCCCAGGCCGATGGGGCGGTGCCGGAGGTTGCTGCG-CTCGGCCGCGG 673
Query 153478 CTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCAC 153529
| ||| ||||| ||| ||||| || ||| ||||||||| | ||||
Sbjct 674 GGACGGGGTAGTGGTTGACGTCGATGATGCGGTTCAGGTTGCGCGTCGCCAC 725
>seq60
Length=8765
Score = 147 bits (162), Expect = 2e-30
Identities = 306/454 (67%), Gaps = 19/454 (4%)
Strand=Plus/Plus
Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451
|| |||||| ||||||| || || || |||||| | || || ||||||||| |
Sbjct 2597 GCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTTCTGC 2656
Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511
|||||| | | || | | || | ||||||||||| || || ||||||| |
Sbjct 2657 TCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCAACGAGCTC 2716
Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACTACAAGACGCGC 52568
|| || || || || || |||||||| |||||||| ||||| ||||| || | | ||
Sbjct 2717 ATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTACTCCATG-CTCGA 2775
Query 52569 GTGACCGAAAAATTGGATTCGGACACGATC--CTGAGCATGTTCAAGG---AGGCGGTGG 52623
| ||| ||| ||| | |||| | | || || |||| ||||
Sbjct 2776 GCACCCGC----------TCGCCATCGAGCGTCTGAACCAGCTCGTGGGCGAGGCCGTGG 2825
Query 52624 CTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGC 52683
||||| ||||||||| | | || |||||||| || || | ||||||||||
Sbjct 2826 AAATCGAGAAGGAGTTTGTCTGCGATGCCCTGCCGGTGGATCTCATCGGCATGAACGGCA 2885
Query 52684 AGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGC 52743
|| ||| || ||||||| ||||||||| || || ||| | || || || ||
Sbjct 2886 AGCTGATGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGCTCGTCGCCCTGGGTGCGC 2945
Query 52744 CAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCA 52803
| ||| || |||||| ||||||||| || | ||| | ||| ||||| ||||||
Sbjct 2946 CCAAGCTCTACAACGCCACCAATCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCA 3005
Query 52804 AGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||||||||||||||||||||| ||||| || ||
Sbjct 3006 AGACCAACTTTTTCGAGAAGCGCGTCGGAGACTA 3039
>seq2724
Length=1646
Score = 102 bits (112), Expect = 8e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| |||| ||| | || | ||| | | | |||||||| || ||||||||||||
Sbjct 1308 GCCGCCGCGCAGACGGAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1367
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| ||| || ||||| || || || || | | || || ||||| ||||| |||||
Sbjct 1368 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGG 1427
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | | || | |||||| | ||||||||
Sbjct 1428 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCAC 1487
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||||| || | || || || ||||| || || || || |||||||||
Sbjct 1488 CTCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 1536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496227252215520
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