Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq60 152 5e-32 seq2724 136 4e-27 seq3257 104 2e-17 seq114 98.7 9e-16 >seq60 Length=8765 Score = 152 bits (168), Expect = 5e-32 Identities = 250/358 (70%), Gaps = 7/358 (2%) Strand=Plus/Plus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 |||||||||||||| ||| ||||||||| ||||| | || || |||||||||||| || Sbjct 2687 ATGCCCGGCCTCACCTTTTCCAACGAGCTCATCTCTCGTGATGAGGGCCTGCACACCGAC 2746 Query 47283 TTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGC 47342 |||||||| || |||| || |||| || | | | | | | | |||| | Sbjct 2747 TTTGCCTGCCTGCTCTACTCCATGC---TCGAGCACCCGCTCGCCAT--CGAGCGTCTGA 2801 Query 47343 GACATGT--TTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCG 47400 || | | | ||| ||||| | || |||| ||||||| || ||| || ||||| | Sbjct 2802 ACCAGCTCGTGGGCGAGGCCGTGGAAATCGAGAAGGAGTTTGTCTGCGATGCCCTGCCGG 2861 Query 47401 AATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACC 47460 | | | || ||||||| || ||||||| ||||||| || ||||| ||||| Sbjct 2862 TGGATCTCATCGGCATGAACGGCAAGCTGATGAGCCAGTACATTGAGTTTGTGAGCGACC 2921 Query 47461 GCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTA 47520 | |||||||| || |||||| | ||| || || ||||| ||||| | | Sbjct 2922 GGCTGCTCGTCGCCCTGGGTGCGCCCAAGCTCTACAACGCCACCAATCCGTTCGACTGGA 2981 Query 47521 TGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || | ||| ||||| |||||||||||||||||||||||||||||||||| || || Sbjct 2982 TGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGAGACTA 3039 >seq2724 Length=1646 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | |||| ||| | |||||||| || || || ||||| ||| | Sbjct 1309 CCGCCGCGCAGACGGAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1368 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| | |||| |||||||| |||||||| Sbjct 1369 AGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGA 1428 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||||| | ||| || Sbjct 1429 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCACC 1488 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || ||||| ||||| || || || || ||||||||| Sbjct 1489 TCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 1536 >seq3257 Length=1341 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| || ||||| ||| || ||||| || || Sbjct 16 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCC 75 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| |||||||| ||||||||||||||| ||| || |||| Sbjct 76 GCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 135 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCC 127086 | | ||| | ||||||| | ||| || |||| ||| | || ||||| Sbjct 136 ACGTTTTCAATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCC 185 >seq114 Length=7431 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCG 146694 ||||| ||||| | ||| || ||||| |||||||| | | |||| || |||||| Sbjct 838 GCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCG 897 Query 146695 GCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GTTG 146751 | ||| ||||||||||||||||| |||||| || | ||||| || ||| |||| Sbjct 898 GTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCT---CTTGGCGTTG 954 Query 146752 CAGGGGTCCTTGTAGAGCATGTACGG 146777 |||| ||||||||| |||||||| || Sbjct 955 CAGGCGTCCTTGTACAGCATGTAGGG 980 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 146062 TGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAAC 146121 ||||||||||| |||||||| | ||| ||||| | || || | |||||||||| | Sbjct 220 TGGTTGACCACGGTGAACTCGCCCGAGAGCACGCGGCGCACGTAGATGTTGCTGGTGTAG 279 Query 146122 GGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCC 146181 |||||||| |||||||||| || | ||||| || | || || |||||| |||| Sbjct 280 GGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGCTGGTGCTCGCCGTGGGCATGGGCGCC 339 Query 146182 ACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||||| ||||| | || ||||| Sbjct 340 ACCAGCAGCGAGTTGCGCAGCCCGTG 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475467122655840