Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq114 242 5e-59 seq81 161 1e-34 seq60 102 1e-16 >seq114 Length=7431 Score = 242 bits (268), Expect = 5e-59 Identities = 571/854 (67%), Gaps = 11/854 (1%) Strand=Plus/Plus Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 || || ||||| || || || || ||||| | ||||| || | |||||||| | Sbjct 832 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACG 891 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 || || || |||| || | ||| || ||||||| ||||| || || ||| | | Sbjct 892 ATCTCGGTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCG 951 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || || || |||||||| ||||| || ||||| ||||||||||| || | || | ||| Sbjct 952 TTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATG 1011 Query 116605 GCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGC--CCCTCCTCCTCGTACT 116662 || ||| || | || || || || | | | || ||| ||||| ||||||| Sbjct 1012 GCGAACCA--CAGCTGCTGCGCGCGCATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACC 1069 Query 116663 TTGTGTAGAGGGCCTCAAACTCTTCACCC-ACAGCCTCTGAGAGCCCTGGTGCCTTATCT 116721 | |||||| | ||||||||| ||| ||| | || | || || || |||| | Sbjct 1070 GCGCGTAGAGCGACTCAAACTCGGGGCCCCACA-CGTCCGCCAGGCCCGGCGCCTCGTTG 1128 Query 116722 GGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 116781 || ||||| || ||| || || || |||| || |||||||| || ||||| |||||| Sbjct 1129 GGGCAGAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATC 1188 Query 116782 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 116841 || ||| | |||| || || || |||||| || || | || || || |||| Sbjct 1189 CACAGCCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGG 1248 Query 116842 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTG 116901 |||| ||||||| | ||||||||||| || |||||||||||||| | | |||||| Sbjct 1249 TCCAGCCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTG 1308 Query 116902 CG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGA 116958 || | || |||||| || |||| ||||| |||| || ||||| ||||| || Sbjct 1309 CGCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGC 1368 Query 116959 ATGATACCATCAGATTG-GCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATC 117017 | | || | | | | ||| || || ||||| || ||| |||| | || || Sbjct 1369 ACCACGCCGT-TGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTC 1427 Query 117018 GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACT 117077 ||| ||||||| || || || || || | ||| ||| ||||||||| |||| | Sbjct 1428 GTGCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGT 1487 Query 117078 GCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTG 117137 | ||||||| || ||||| ||| ||||| | || | | |||||||| || || Sbjct 1488 GTCGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTG 1547 Query 117138 TGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGA 117197 || | || || || ||||||||||| || || | |||||| ||||| || ||| Sbjct 1548 CGGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCT 1607 Query 117198 CATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGAC 117257 || | | ||| ||||| | | || | ||| ||| ||| || || || || || Sbjct 1608 CAGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACAC 1667 Query 117258 CCGCATAAACATGT 117271 ||||| | ||||| Sbjct 1668 GCGCATCAGCATGT 1681 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 115841 TGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCA 115900 |||| || | || ||||| | ||||| || ||||| |||| ||| ||| | || Sbjct 200 TGAGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAACTCGCCCGAGAGCACGCGGCGCA 259 Query 115901 GATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGG 115960 ||||||||| | ||||| ||||| |||||||| ||||| |||||||| ||| ||| Sbjct 260 CGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGCTGGTGC 319 Query 115961 AGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 || ||||||||||| |||| || || |||||| || || Sbjct 320 TCGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCAGCCC 362 >seq81 Length=8194 Score = 161 bits (178), Expect = 1e-34 Identities = 380/559 (68%), Gaps = 16/559 (3%) Strand=Plus/Plus Query 176429 GCCTCAGCCGAGGTTGAAGTACCGAGACCCTTGTAGTATTTGATTTTCCACCCG-GGCTG 176487 ||||| || | ||| || || ||||||||||||||||| |||| |||| ||| ||| | Sbjct 827 GCCTCGGCGGCGGTGGAGGTGCCGAGACCCTTGTAGTACTTGACGCTCCAGCCGCGGCGG 886 Query 176488 TCCATTTC--CATACCA-GCTACGGAAAGCTGAATCGGTATAGAAA--GACTTTGACTGC 176542 || || | |||| || || | | | | |||| ||||| || | || || Sbjct 887 TCGCGCTCTTCGCACCACGCCTCGTATTCCGGCA-CGGTGTAGAAGCTGA-TCTGCTCGC 944 Query 176543 GTACCCTTGGAAGCCTTGATGATTGGTGTCACCATTGAGACCACAAACCCC---AACTTG 176599 | |||||||| ||| |||||||| || ||||| | |||| ||| ||| | |||| Sbjct 945 G-ACCCTTGGTAGCTTTGATGATGGGGGTCACAAACTCCACCAAAAATCCCGGCAGCTTG 1003 Query 176600 AGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCA 176659 || || || | ||| ||| | || | |||||||||||| ||||| || || Sbjct 1004 AGCAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAGCCG 1063 Query 176660 TCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAGCTCGGAAACATCTTGA 176719 |||| ||| ||||||||| |||||||| | || ||||| ||| | | | Sbjct 1064 TCGTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCGCTGTTGTTG 1123 Query 176720 TAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAA-CTCTTGGTTTGA 176778 || ||||| || || || || |||| |||| ||||| | ||||| ||| ||| Sbjct 1124 TACTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGT-TTTGAATCTCGGCGTTGCC 1182 Query 176779 TGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACAC 176838 | || || ||| | ||||| || || || || ||| |||||||| |||||||| Sbjct 1183 CGAGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAACAC 1242 Query 176839 ACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATC 176898 |||||| |||| || || ||||| || || || || || || || ||||| || || || Sbjct 1243 TCCGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGAGTC 1302 Query 176899 ACCCTCCGTCACGATGAGCGTACACTTTCCAGA-TTGTGCCGTCCCCGCCTTGTTCGCAT 176957 ||||| || | |||||| || |||| || ||| ||| ||||| | ||| || | Sbjct 1303 TCCCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCC-CGCCCGCGTCGTTTGCGT 1361 Query 176958 CGTCCAACTTGGGAATACC 176976 |||| | ||||||||| || Sbjct 1362 CGTCGAGCTTGGGAATGCC 1380 Score = 109 bits (120), Expect = 7e-19 Identities = 206/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 175901 GTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGA 175960 ||||||||||| | || | || || ||||| ||| || ||||| ||||| ||| Sbjct 311 GTGAAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGA 370 Query 175961 CCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACA 176020 || ||| | ||| |||| ||||| ||||||| | |||| | || | || Sbjct 371 CCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACG 430 Query 176021 ATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCC 176080 || || || ||||||| || ||||||||||| || ||| |||||||| || || Sbjct 431 ATGGTGCCCATGAGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCCC 490 Query 176081 GCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACC 176140 |||| |||||| ||||| || || | ||| ||||| | |||||| ||| ||| || | Sbjct 491 GCCAGCTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGAAGCAGGCAAACAGGATC 550 Query 176141 TTTCTCTGTGAAGGCTTGAGGCCGT---CGGCCATGTGTGCGATGGAACGCTTCAAGTCT 176197 || | ||| || ||||| |||| |||| || | |||||| |||| || ||| Sbjct 551 TTGCGCTGCCCGGGTTTGAGCCCGTCCACGGCGCTG---GGGATGGAGCGCTCCAGGTCG 607 Query 176198 GC 176199 || Sbjct 608 GC 609 >seq60 Length=8765 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || ||||| ||||| |||||||| || || || ||| || || Sbjct 2751 GCAAAGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCCG 2692 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||| | || | || || ||| |||||| || Sbjct 2691 GGCATGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGAAGAAAATG 2632 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 |||||||| ||||| ||||| | || ||||| |||||| Sbjct 2631 CCCTCCACGCACGCAAACGCCACCAGGCGCTCCGCAAAG 2593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613463748352560