Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq114 197 2e-45
seq60 152 8e-32
seq2314 138 2e-27
>seq114
Length=7431
Score = 197 bits (218), Expect = 2e-45
Identities = 567/862 (66%), Gaps = 14/862 (2%)
Strand=Plus/Plus
Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942
||| |||||||||||||||| ||| | |||||| | | |||| | |||||||||
Sbjct 885 CTCGACGATCTCGGTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCT 944
Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002
|||| ||| |||| ||||||||||| |||| | ||| | || ||||| |||| |
Sbjct 945 CTTGGCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTC 1004
Query 205003 CAGAATGTGGGTCCACAATT----CGCGAGCCTCCACTTGCTTCACGTACATCCCTTGAG 205058
|| |||| | ||||| | |||| || || ||||| || | |||| | |
Sbjct 1005 CAAAATGGCGAACCACAGCTGCTGCGCGCGCATCGTCTTGCG---CGCGCGGCCCTCGCG 1061
Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGAC 205118
|||||| | ||| |||| | |||| || | || |||||||| ||| || ||
Sbjct 1062 -CTCGTACCGCGCGTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCG 1120
Query 205119 ATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGT 205178
| ||||| || | ||| |||| | || | | || | || |||||||||||
Sbjct 1121 CCTCGTTGGGGCAGAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGT 1180
Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238
|| ||||||||| ||||| ||||| || ||||| | | | || | || ||||||
Sbjct 1181 CGGGGATCCACAGCCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCT 1240
Query 205239 TTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298
| || ||||||||| || | ||| |||||||| ||||| | |||| || | |
Sbjct 1241 TGCGCAGGTCCAGCCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGG 1300
Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358
|||| | |||| || ||||||||||| |||| | | ||||||| || ||||
Sbjct 1301 CGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCA 1360
Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCC 205418
|||| ||||||| |||||| || ||||| |||| |||| ||| || || |
Sbjct 1361 GCATGGGCACCACGCCGTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGC 1420
Query 205419 TCACGTTGGAGATG-GCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCT 205477
| || | ||| || || || || ||||| | | |||| ||| ||||||||
Sbjct 1421 GGATGTCGTGCATGTGCAGC-CCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCC 1479
Query 205478 TGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAA 205537
| || ||| ||||||||| ||||| ||| || || | ||||| | |||| |
Sbjct 1480 TTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCA-GCT 1538
Query 205538 GC-CAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCG 205596
|| ||||| | | ||||||||||| ||||||||| || ||||| |||| |
Sbjct 1539 GCTCAGCTGCGGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCA 1598
Query 205597 CTTCTCGCTCAAACACCT-GTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATAC 205655
|| |||| | || | ||| ||||| | | | ||||| || ||| || |
Sbjct 1599 ACGCTGGCTC-AGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGC 1657
Query 205656 CTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTTGA 205715
| || | | | ||| | | ||| || || | ||||| |||| | ||||||| ||
Sbjct 1658 CCATCGACACGCGCATCAGCATGTGCTGCGGACGCTCCACCACCTTGCCGTTCACGCGGA 1717
Query 205716 GCAGATAGGCTCTCTCTAGGGT 205737
|||| || | | ||| |||||
Sbjct 1718 GCAGGTACGAGCGCTCCAGGGT 1739
Score = 120 bits (132), Expect = 5e-22
Identities = 414/634 (65%), Gaps = 14/634 (2%)
Strand=Plus/Plus
Query 203965 CATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATAT 204023
|||||| | ||| | |||||| ||||||||| | |||||| || || |||||||| |
Sbjct 3 CATGTGCACGTTGAAGCTCTGGCTCTGGTCGATGTA-GGCGCCGCGGTCGGCGGCCATGT 61
Query 204024 TGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGAG 204083
|| | |||| |||||||||||||||||| ||| | | || || | |
Sbjct 62 CGACCAGCACGCGCTGCTTGATCTCCCACACCGTCTTGTACAGGCCCTTGAGGTCCTCGG 121
Query 204084 GCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC-TCC 204142
|||| || || | | ||| ||| || ||||| ||| ||| | || | ||
Sbjct 122 GCACGTCGAGGGCCGCC---ACCGACCCGCCGTGGGCCACCAG-CTCGTTCTTGAGGTCG 177
Query 204143 TCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAG 204202
| |||| | |||| | | || || ||| ||||||| |||||| | ||
Sbjct 178 GCGTCCCAGAGCCCCAGGCGCGTGAGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAAC 237
Query 204203 TCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTG 204262
|| || || ||||| | || | | | |||| ||||| | || ||||| |||||||
Sbjct 238 TCGCCCGAGAGCACGCGGCGCACGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTG 297
Query 204263 TTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGC 204322
||||| || ||||| |||||| |||||||||||||| |||| ||||| |||||||||
Sbjct 298 TTGCCCAAGATCTGGCTGGTGCTCGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGC 357
Query 204323 ACACCGTATTTTTGGACCCT-GCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT---GGG 204378
| |||| | | || | |||| ||| | |||||| | | | || |||
Sbjct 358 AGCCCGTGCTCGCGCACGGTCGCGC-GCAGGGCCTCCCAGTCCCACCGCCCGCTCTGGGG 416
Query 204379 TTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGT 204438
|||||||||||| |||| ||| | |||| || | || || ||| ||
Sbjct 417 CGTCACGCCCCACAGGTCGTGCTGCAGCTTGCCCTGGGACGCCGGAGACCCGGCGTAGGT 476
Query 204439 CGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACAT 204498
| || ||| || || |||| |||||||| | || ||| ||||| |
Sbjct 477 CTCGTACGGCCCGTCGCGGCGGGCGAGCTCGCACGAGGTGCGCAGCGCGGCGTAGTAGAC 536
Query 204499 GGTCTCAAAGATCTGAACGTTTAATCTG-GCGGCCTCCGTTCCGTCAAACGCCAGACCCA 204557
|||||| ||||| | || || | ||| |||||||| | |||||||| | || ||||
Sbjct 537 GGTCTCGAAGATGT-CGCGGTTGAGCTGCGCGGCCTCGGGCCCGTCAAAGGGCATGCCCA 595
Query 204558 GCATGGCAAACACGTCCGCCAAGCCCTGCACTCC 204591
||| | || |||| |||| ||||||||| ||
Sbjct 596 GCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCC 629
>seq60
Length=8765
Score = 152 bits (168), Expect = 8e-32
Identities = 300/439 (68%), Gaps = 11/439 (3%)
Strand=Plus/Minus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
|||||||||||||||||||||||||| || || || ||||| | |||| || ||
Sbjct 3025 CTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGATT 2966
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| ||| ||| |||| || || || || | |||| || ||| |||||| ||
Sbjct 2965 GGTGGCGTTGTAGAGCTTGGGCGCACCCAGGGCGACGAGCAGCCGGTCGCTCACAAACTC 2906
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
||||| | |||| ||| | ||| || || | || || || || || || |
Sbjct 2905 AATGTACTGGCTCATCAGCTTGCCGTTCATGCCGATGAGATCCACCGGCAGGGCATCGCA 2846
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888
| |||||||||||| || || || || ||| ||| | ||| | ||| ||| |
Sbjct 2845 GACAAACTCCTTCTCGATTTCCACGGCCTCGCCCACGAGCTGGTTCAGACGCTCGATGGC 2786
Query 159889 CGGCT--TGCCCAAA-ATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945
|| ||| | | ||| || | || ||||| ||||||||| |||||| ||
Sbjct 2785 GAGCGGGTGCTCGAGCATGGAGT------AGAGCAGGCAGGCAAAGTCGGTGTGCAGGCC 2732
Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005
||| || |||||||||| ||||||||| | | ||||||| ||||||| || ||| ||
Sbjct 2731 CTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCCGGGCATGAGACCGCGCTTCTT 2672
Query 160006 GAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064
|| ||| | |||| ||| |||| ||||| || || || ||||||||| ||||||||
Sbjct 2671 GACCCAGTAGATGGA-GCAGAAGCTGCCGCTGAAGAAAATGCCCTCCACGCACGCAAACG 2613
Query 160065 CCACGAGCCTCTCACCAAA 160083
|||| || | ||| ||||
Sbjct 2612 CCACCAGGCGCTCCGCAAA 2594
>seq2314
Length=1923
Score = 138 bits (152), Expect = 2e-27
Identities = 137/175 (78%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976
|| ||||| ||||||||| |||||| |||||||||||||| |||| ||||||||| | |
Sbjct 1674 AGCAGGCAGGCAAAGTCGGTGTGCAGGCCCTCGTCCCGAGAAATGAGCTCGTTGGAAAAG 1733
Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCT 160035
|||| |||||||||| || ||| ||||||||| | |||| |||| || || |||||
Sbjct 1734 GTGAGCCCCGGCATGAGGCCGCGCTTTTTGAGCCAGTAGATGG-CGCAGAAGGCGCCGCT 1792
Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090
|| ||| ||||||||| ||||||||||| || | || |||| ||||||
Sbjct 1793 GAAGTGGATGCCCTCCACGCACGCAAACGCCAGCAGGCGCTGCGCAAAGGAGGCG 1847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795098883132960
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