Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq114 197 2e-45 seq60 152 8e-32 seq2314 138 2e-27 >seq114 Length=7431 Score = 197 bits (218), Expect = 2e-45 Identities = 567/862 (66%), Gaps = 14/862 (2%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| |||||||||||||||| ||| | |||||| | | |||| | ||||||||| Sbjct 885 CTCGACGATCTCGGTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCT 944 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 |||| ||| |||| ||||||||||| |||| | ||| | || ||||| |||| | Sbjct 945 CTTGGCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTC 1004 Query 205003 CAGAATGTGGGTCCACAATT----CGCGAGCCTCCACTTGCTTCACGTACATCCCTTGAG 205058 || |||| | ||||| | |||| || || ||||| || | |||| | | Sbjct 1005 CAAAATGGCGAACCACAGCTGCTGCGCGCGCATCGTCTTGCG---CGCGCGGCCCTCGCG 1061 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGAC 205118 |||||| | ||| |||| | |||| || | || |||||||| ||| || || Sbjct 1062 -CTCGTACCGCGCGTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCG 1120 Query 205119 ATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGT 205178 | ||||| || | ||| |||| | || | | || | || ||||||||||| Sbjct 1121 CCTCGTTGGGGCAGAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGT 1180 Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238 || ||||||||| ||||| ||||| || ||||| | | | || | || |||||| Sbjct 1181 CGGGGATCCACAGCCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCT 1240 Query 205239 TTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298 | || ||||||||| || | ||| |||||||| ||||| | |||| || | | Sbjct 1241 TGCGCAGGTCCAGCCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGG 1300 Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358 |||| | |||| || ||||||||||| |||| | | ||||||| || |||| Sbjct 1301 CGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCA 1360 Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCC 205418 |||| ||||||| |||||| || ||||| |||| |||| ||| || || | Sbjct 1361 GCATGGGCACCACGCCGTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGC 1420 Query 205419 TCACGTTGGAGATG-GCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCT 205477 | || | ||| || || || || ||||| | | |||| ||| |||||||| Sbjct 1421 GGATGTCGTGCATGTGCAGC-CCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCC 1479 Query 205478 TGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAA 205537 | || ||| ||||||||| ||||| ||| || || | ||||| | |||| | Sbjct 1480 TTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCA-GCT 1538 Query 205538 GC-CAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCG 205596 || ||||| | | ||||||||||| ||||||||| || ||||| |||| | Sbjct 1539 GCTCAGCTGCGGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCA 1598 Query 205597 CTTCTCGCTCAAACACCT-GTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATAC 205655 || |||| | || | ||| ||||| | | | ||||| || ||| || | Sbjct 1599 ACGCTGGCTC-AGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGC 1657 Query 205656 CTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTTGA 205715 | || | | | ||| | | ||| || || | ||||| |||| | ||||||| || Sbjct 1658 CCATCGACACGCGCATCAGCATGTGCTGCGGACGCTCCACCACCTTGCCGTTCACGCGGA 1717 Query 205716 GCAGATAGGCTCTCTCTAGGGT 205737 |||| || | | ||| ||||| Sbjct 1718 GCAGGTACGAGCGCTCCAGGGT 1739 Score = 120 bits (132), Expect = 5e-22 Identities = 414/634 (65%), Gaps = 14/634 (2%) Strand=Plus/Plus Query 203965 CATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATAT 204023 |||||| | ||| | |||||| ||||||||| | |||||| || || |||||||| | Sbjct 3 CATGTGCACGTTGAAGCTCTGGCTCTGGTCGATGTA-GGCGCCGCGGTCGGCGGCCATGT 61 Query 204024 TGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGAG 204083 || | |||| |||||||||||||||||| ||| | | || || | | Sbjct 62 CGACCAGCACGCGCTGCTTGATCTCCCACACCGTCTTGTACAGGCCCTTGAGGTCCTCGG 121 Query 204084 GCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC-TCC 204142 |||| || || | | ||| ||| || ||||| ||| ||| | || | || Sbjct 122 GCACGTCGAGGGCCGCC---ACCGACCCGCCGTGGGCCACCAG-CTCGTTCTTGAGGTCG 177 Query 204143 TCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAG 204202 | |||| | |||| | | || || ||| ||||||| |||||| | || Sbjct 178 GCGTCCCAGAGCCCCAGGCGCGTGAGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAAC 237 Query 204203 TCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTG 204262 || || || ||||| | || | | | |||| ||||| | || ||||| ||||||| Sbjct 238 TCGCCCGAGAGCACGCGGCGCACGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTG 297 Query 204263 TTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGC 204322 ||||| || ||||| |||||| |||||||||||||| |||| ||||| ||||||||| Sbjct 298 TTGCCCAAGATCTGGCTGGTGCTCGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGC 357 Query 204323 ACACCGTATTTTTGGACCCT-GCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT---GGG 204378 | |||| | | || | |||| ||| | |||||| | | | || ||| Sbjct 358 AGCCCGTGCTCGCGCACGGTCGCGC-GCAGGGCCTCCCAGTCCCACCGCCCGCTCTGGGG 416 Query 204379 TTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGT 204438 |||||||||||| |||| ||| | |||| || | || || ||| || Sbjct 417 CGTCACGCCCCACAGGTCGTGCTGCAGCTTGCCCTGGGACGCCGGAGACCCGGCGTAGGT 476 Query 204439 CGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACAT 204498 | || ||| || || |||| |||||||| | || ||| ||||| | Sbjct 477 CTCGTACGGCCCGTCGCGGCGGGCGAGCTCGCACGAGGTGCGCAGCGCGGCGTAGTAGAC 536 Query 204499 GGTCTCAAAGATCTGAACGTTTAATCTG-GCGGCCTCCGTTCCGTCAAACGCCAGACCCA 204557 |||||| ||||| | || || | ||| |||||||| | |||||||| | || |||| Sbjct 537 GGTCTCGAAGATGT-CGCGGTTGAGCTGCGCGGCCTCGGGCCCGTCAAAGGGCATGCCCA 595 Query 204558 GCATGGCAAACACGTCCGCCAAGCCCTGCACTCC 204591 ||| | || |||| |||| ||||||||| || Sbjct 596 GCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCC 629 >seq60 Length=8765 Score = 152 bits (168), Expect = 8e-32 Identities = 300/439 (68%), Gaps = 11/439 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||||||||||||||||||||||| || || || ||||| | |||| || || Sbjct 3025 CTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGATT 2966 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| |||| || || || || | |||| || ||| |||||| || Sbjct 2965 GGTGGCGTTGTAGAGCTTGGGCGCACCCAGGGCGACGAGCAGCCGGTCGCTCACAAACTC 2906 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| | |||| ||| | ||| || || | || || || || || || | Sbjct 2905 AATGTACTGGCTCATCAGCTTGCCGTTCATGCCGATGAGATCCACCGGCAGGGCATCGCA 2846 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 | |||||||||||| || || || || ||| ||| | ||| | ||| ||| | Sbjct 2845 GACAAACTCCTTCTCGATTTCCACGGCCTCGCCCACGAGCTGGTTCAGACGCTCGATGGC 2786 Query 159889 CGGCT--TGCCCAAA-ATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 || ||| | | ||| || | || ||||| ||||||||| |||||| || Sbjct 2785 GAGCGGGTGCTCGAGCATGGAGT------AGAGCAGGCAGGCAAAGTCGGTGTGCAGGCC 2732 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 ||| || |||||||||| ||||||||| | | ||||||| ||||||| || ||| || Sbjct 2731 CTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCCGGGCATGAGACCGCGCTTCTT 2672 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 || ||| | |||| ||| |||| ||||| || || || ||||||||| |||||||| Sbjct 2671 GACCCAGTAGATGGA-GCAGAAGCTGCCGCTGAAGAAAATGCCCTCCACGCACGCAAACG 2613 Query 160065 CCACGAGCCTCTCACCAAA 160083 |||| || | ||| |||| Sbjct 2612 CCACCAGGCGCTCCGCAAA 2594 >seq2314 Length=1923 Score = 138 bits (152), Expect = 2e-27 Identities = 137/175 (78%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 || ||||| ||||||||| |||||| |||||||||||||| |||| ||||||||| | | Sbjct 1674 AGCAGGCAGGCAAAGTCGGTGTGCAGGCCCTCGTCCCGAGAAATGAGCTCGTTGGAAAAG 1733 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCT 160035 |||| |||||||||| || ||| ||||||||| | |||| |||| || || ||||| Sbjct 1734 GTGAGCCCCGGCATGAGGCCGCGCTTTTTGAGCCAGTAGATGG-CGCAGAAGGCGCCGCT 1792 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 || ||| ||||||||| ||||||||||| || | || |||| |||||| Sbjct 1793 GAAGTGGATGCCCTCCACGCACGCAAACGCCAGCAGGCGCTGCGCAAAGGAGGCG 1847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795098883132960