Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq2724 125 2e-23
seq3257 113 1e-19
seq55 109 1e-18
>seq2724
Length=1646
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || || || || |||||||| |||| ||||||||| | || ||| | |||||
Sbjct 1324 AGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 1383
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || ||||| || || ||||||||||| ||| ||| || || |||
Sbjct 1384 TCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 1443
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| |||||| | | || || || | ||||| |||
Sbjct 1444 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTC 1503
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| || || || || || || ||
Sbjct 1504 TTGCCCGTCAGCGTCTTGACGAAGATCTG 1532
Score = 95.1 bits (104), Expect = 3e-14
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || || |||||||| |||| ||||||||| | || ||| | ||||||
Sbjct 1552 AGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCT 1611
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTG 199512
||||||||||| || ||||| || || ||||||||
Sbjct 1612 TCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTG 1646
>seq3257
Length=1341
Score = 113 bits (124), Expect = 1e-19
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || || |||||||| |||| ||||||||| | || ||| | |||||
Sbjct 1 AGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 60
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || ||||| || || ||||||||||| ||| ||| || || |||
Sbjct 61 TCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 120
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| ||| | ||||| | | || || || | ||||| |||
Sbjct 121 TGGATCTTGGCCTTGACGTTTTCAATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTC 180
Query 199598 TTACC 199602
|| ||
Sbjct 181 TTGCC 185
>seq55
Length=8980
Score = 109 bits (120), Expect = 1e-18
Identities = 101/128 (79%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||||||| || |||||||| |||| ||||||||| |||| || | || ||
Sbjct 4027 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 4086
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||||||||| || ||||||||||| || || || || |||
Sbjct 4087 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 4146
Query 199538 TGAATCTT 199545
||||||||
Sbjct 4147 TGAATCTT 4154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178836015449622
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |