Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq2724 165 9e-36
seq3257 125 8e-24
seq55 105 8e-18
>seq2724
Length=1646
Score = 165 bits (182), Expect = 9e-36
Identities = 162/209 (78%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | ||| |||||| ||||| ||||||||||| |||||||| | || ||
Sbjct 1327 ACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 1386
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| |||| |||||||||||||| || | || |||||||||| |
Sbjct 1387 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGG 1446
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||||| || | | ||||| || ||||| || | |||||||| |||
Sbjct 1447 ATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTG 1506
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||||||||| || || ||||| |||||
Sbjct 1507 CCCGTCAGCGTCTTGACGAAGATCTGCAT 1535
Score = 89.7 bits (98), Expect = 6e-13
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | ||| |||||| ||||| ||||||||||| |||||||| | || ||
Sbjct 1555 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCTTCC 1614
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476
||||||||||| ||||| |||| |||||||||
Sbjct 1615 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTG 1646
>seq3257
Length=1341
Score = 125 bits (138), Expect = 8e-24
Identities = 137/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | ||| |||||| ||||| ||||||||||| |||||||| | || ||
Sbjct 4 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 63
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| |||| |||||||||||||| || | || |||||||||| |
Sbjct 64 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGG 123
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||||| | | | ||||| || ||||| || | |||||||| |||
Sbjct 124 ATCTTGGCCTTGACGTTTTCAATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTG 183
Query 46565 CC 46566
||
Sbjct 184 CC 185
>seq55
Length=8980
Score = 105 bits (116), Expect = 8e-18
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| || ||||| |||| || |||||||||||||||||
Sbjct 4047 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 4106
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
|||| |||||||||||| | || | || |||||||||| ||||| |||||
Sbjct 4107 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA 4162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565198366990320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |