Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2724 165 9e-36 seq3257 125 8e-24 seq55 105 8e-18 >seq2724 Length=1646 Score = 165 bits (182), Expect = 9e-36 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | ||| |||||| ||||| ||||||||||| |||||||| | || || Sbjct 1327 ACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 1386 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| |||| |||||||||||||| || | || |||||||||| | Sbjct 1387 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGG 1446 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| || | | ||||| || ||||| || | |||||||| ||| Sbjct 1447 ATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTG 1506 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||||| || || ||||| ||||| Sbjct 1507 CCCGTCAGCGTCTTGACGAAGATCTGCAT 1535 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| ||||||||||| |||||||| | || || Sbjct 1555 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCTTCC 1614 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476 ||||||||||| ||||| |||| ||||||||| Sbjct 1615 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTG 1646 >seq3257 Length=1341 Score = 125 bits (138), Expect = 8e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| ||||||||||| |||||||| | || || Sbjct 4 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 63 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| |||| |||||||||||||| || | || |||||||||| | Sbjct 64 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGG 123 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | ||||| || ||||| || | |||||||| ||| Sbjct 124 ATCTTGGCCTTGACGTTTTCAATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTG 183 Query 46565 CC 46566 || Sbjct 184 CC 185 >seq55 Length=8980 Score = 105 bits (116), Expect = 8e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| || ||||||||||||||||| Sbjct 4047 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 4106 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| |||||||||||| | || | || |||||||||| ||||| ||||| Sbjct 4107 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA 4162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565198366990320