Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq60 163 3e-35
seq2724 158 1e-33
seq3257 116 4e-21
seq2314 109 5e-19
seq55 100 3e-16
>seq60
Length=8765
Score = 163 bits (180), Expect = 3e-35
Identities = 366/543 (67%), Gaps = 9/543 (2%)
Strand=Plus/Minus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| ||||| ||||| || || || || ||||| ||||| || || || ||||
Sbjct 3058 CATGACGCCGGCCTTTTGGTAGTCTCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTG 2999
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710
|| || |||||| ||| | || || || |||| | ||||||| |||||| |
Sbjct 2998 CAGCGAGATGAGCTCCATCCAGTCGAACGGATTGGTGGCGTTGTAGAGCTTGGGCGCACC 2939
Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770
|||| |||||||||||| |||| ||| ||||| ||||| || ||| | || ||
Sbjct 2938 CAGGGCGACGAGCAGCCGGTCGCTCACAAACTCAATGTACTGGCTCATCAGCTTGCCGTT 2879
Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830
| || | ||| ||||||||| || ||| || ||| | |||||| | || ||
Sbjct 2878 CATGCCGATGAGATCCACCGGCAGGGCATCGCAGACAAACTCCTTCTCGATTTCCACGGC 2819
Query 132831 GTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAA-ATGCTTGAACA 132889
||| |||| | | | ||| | | || | ||| | | ||| | | |
Sbjct 2818 CTCGCCCACGAGCTGGTTCAGACGCTCGATGGCGAGCGGGTGCTCGAGCATGGA-GTAGA 2760
Query 132890 TCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAG 132949
|| ||| ||||||||| |||| |||||| || | || ||||| |||||| || |
Sbjct 2759 GCAGGCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGG 2700
Query 132950 TCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAA 133009
| | |||||||||||| ||||| || |||| ||| | |||| | ||| ||||| |
Sbjct 2699 TGAGGCCGGGCATGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGA 2640
Query 133010 AGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT-TCTTTG 133068
|||| | |||||| ||| ||| || |||||||||||||| | || ||| || |
Sbjct 2639 AGAAAATGCCCTCCACGCACGCAAACGCCACCAGGCGCTCCGCAAA----GCTCTCCGAG 2584
Query 133069 CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCAC-GGCATCGTTTCGAT 133127
| | |||||||||||| ||||| |||||||| | || || ||| || | ||| ||| |
Sbjct 2583 CCGTTGATCCAGCGCAGAGCCCAGTCGGCCTTCTTCTTCAC-CACGGGTACCGTCTCGGT 2525
Query 133128 GGC 133130
|||
Sbjct 2524 GGC 2522
Score = 105 bits (116), Expect = 7e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248
||||| || ||||| | |||||| ||||| || || || ||||||||| || ||||||
Sbjct 2342 TACATCTCAGAGTGGATGTTCTCGATGGCAATCTGGAACCCGTAAAAGGCACGGGCCTCG 2283
Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308
|| ||| |||| |||||| || |||| || || ||||||||| ||| |
Sbjct 2282 GGAACGGTCACCTCTTTCATAAAACGCACGCCCAGGTTCTCCAGGACGATGCCATCGGAG 2223
Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCC 133368
| || || || || || | ||| |||||| |||||||||||| | || | ||||
Sbjct 2222 CCAGCAAAGAAAGCGAGGATGTGGGAGATGAAGTGGCGCTCGTTGCCATTGAGCTTCTCC 2163
Query 133369 CAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404
||||| || |||| | ||| ||||||||||||
Sbjct 2162 CAGTCCTGCATGTCGCTACCCAGATCCACCTCCTCG 2127
>seq2724
Length=1646
Score = 158 bits (174), Expect = 1e-33
Identities = 174/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || ||||| |||||||| ||||||||| |||| || ||| | |
Sbjct 1535 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCG 1476
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| ||||| |||||||
Sbjct 1475 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 1417
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| ||||||||| |||||||| || | ||||| || |||||||||
Sbjct 1416 GCAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 1357
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| | || || ||| |||| || ||| || | ||||||
Sbjct 1356 CATCCAGAAGGAGTCTACCCTTCATCTGGTCCTCCGTCTGCGCGGCGGC 1308
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || |||| ||||||||| |||||||| || | ||||| || |||||||
Sbjct 1646 CAGCAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCCGACTAC 1587
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||||| ||||| | || || || |||| || ||| || | ||||||
Sbjct 1586 AACATCCAGAAGGAGTCTACCCTTCACCTGGTCCTCCGTCTGCGTGGCGGC 1536
>seq3257
Length=1341
Score = 116 bits (128), Expect = 4e-21
Identities = 139/186 (75%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAA 38329
||||| ||||||||| |||| || ||| | | |||| | | ||||| | || | ||
Sbjct 185 GGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATTGAAAACG-TCAAGGCCAA 127
Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389
|||| ||||| ||||| ||||| ||||||| ||||| || |||| ||||||||| ||
Sbjct 126 GATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCGGGCAAGCA 67
Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449
|||||| || | ||||| || ||||||||||||||| ||||| | || || || |
Sbjct 66 GCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCACCT 7
Query 38450 GGTGCT 38455
||| ||
Sbjct 6 GGTCCT 1
>seq2314
Length=1923
Score = 109 bits (120), Expect = 5e-19
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950
|| ||| ||||||||| |||| ||||||||||| |||||||| |||||| || ||
Sbjct 1676 CAGGCAGGCAAAGTCGGTGTGCAGGCCCTCGTCCCGAGAAATGAGCTCGTTGGAAAAGGT 1735
Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010
| || |||||||||||||| ||||||||||| | |||||| ||| ||| ||
Sbjct 1736 GAGCCCCGGCATGAGGCCGCGCTTTTTGAGCCAGTAGATGGCGCAGAAGGCGCCGCTGAA 1795
Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCT 133048
| || |||||| ||| ||| || |||| ||||||||
Sbjct 1796 GTGGATGCCCTCCACGCACGCAAACGCCAGCAGGCGCT 1833
>seq55
Length=8980
Score = 100 bits (110), Expect = 3e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| || ||| | ||||| ||||| || || | ||| ||||| ||||||||
Sbjct 4145 GACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAG 4086
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| |||||||| ||||||||||||||| ||||| | || || || |||| ||
Sbjct 4085 GACGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTC 4026
Query 38457 CGTTTGAGAGGCGGC 38471
|| || | ||||||
Sbjct 4025 CGCCTGCGCGGCGGC 4011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500137375261440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |