Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq60 163 3e-35 seq2724 158 1e-33 seq3257 116 4e-21 seq2314 109 5e-19 seq55 100 3e-16 >seq60 Length=8765 Score = 163 bits (180), Expect = 3e-35 Identities = 366/543 (67%), Gaps = 9/543 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| ||||| || || || || ||||| ||||| || || || |||| Sbjct 3058 CATGACGCCGGCCTTTTGGTAGTCTCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTG 2999 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || |||||| ||| | || || || |||| | ||||||| |||||| | Sbjct 2998 CAGCGAGATGAGCTCCATCCAGTCGAACGGATTGGTGGCGTTGTAGAGCTTGGGCGCACC 2939 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 |||| |||||||||||| |||| ||| ||||| ||||| || ||| | || || Sbjct 2938 CAGGGCGACGAGCAGCCGGTCGCTCACAAACTCAATGTACTGGCTCATCAGCTTGCCGTT 2879 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830 | || | ||| ||||||||| || ||| || ||| | |||||| | || || Sbjct 2878 CATGCCGATGAGATCCACCGGCAGGGCATCGCAGACAAACTCCTTCTCGATTTCCACGGC 2819 Query 132831 GTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAA-ATGCTTGAACA 132889 ||| |||| | | | ||| | | || | ||| | | ||| | | | Sbjct 2818 CTCGCCCACGAGCTGGTTCAGACGCTCGATGGCGAGCGGGTGCTCGAGCATGGA-GTAGA 2760 Query 132890 TCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAG 132949 || ||| ||||||||| |||| |||||| || | || ||||| |||||| || | Sbjct 2759 GCAGGCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGG 2700 Query 132950 TCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAA 133009 | | |||||||||||| ||||| || |||| ||| | |||| | ||| ||||| | Sbjct 2699 TGAGGCCGGGCATGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGA 2640 Query 133010 AGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT-TCTTTG 133068 |||| | |||||| ||| ||| || |||||||||||||| | || ||| || | Sbjct 2639 AGAAAATGCCCTCCACGCACGCAAACGCCACCAGGCGCTCCGCAAA----GCTCTCCGAG 2584 Query 133069 CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCAC-GGCATCGTTTCGAT 133127 | | |||||||||||| ||||| |||||||| | || || ||| || | ||| ||| | Sbjct 2583 CCGTTGATCCAGCGCAGAGCCCAGTCGGCCTTCTTCTTCAC-CACGGGTACCGTCTCGGT 2525 Query 133128 GGC 133130 ||| Sbjct 2524 GGC 2522 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 ||||| || ||||| | |||||| ||||| || || || ||||||||| || |||||| Sbjct 2342 TACATCTCAGAGTGGATGTTCTCGATGGCAATCTGGAACCCGTAAAAGGCACGGGCCTCG 2283 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 || ||| |||| |||||| || |||| || || ||||||||| ||| | Sbjct 2282 GGAACGGTCACCTCTTTCATAAAACGCACGCCCAGGTTCTCCAGGACGATGCCATCGGAG 2223 Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCC 133368 | || || || || || | ||| |||||| |||||||||||| | || | |||| Sbjct 2222 CCAGCAAAGAAAGCGAGGATGTGGGAGATGAAGTGGCGCTCGTTGCCATTGAGCTTCTCC 2163 Query 133369 CAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 ||||| || |||| | ||| |||||||||||| Sbjct 2162 CAGTCCTGCATGTCGCTACCCAGATCCACCTCCTCG 2127 >seq2724 Length=1646 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| ||||||||| |||| || ||| | | Sbjct 1535 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCG 1476 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| ||||| ||||||| Sbjct 1475 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 1417 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||||||||| |||||||| || | ||||| || ||||||||| Sbjct 1416 GCAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 1357 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || ||| |||| || ||| || | |||||| Sbjct 1356 CATCCAGAAGGAGTCTACCCTTCATCTGGTCCTCCGTCTGCGCGGCGGC 1308 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || |||| ||||||||| |||||||| || | ||||| || ||||||| Sbjct 1646 CAGCAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCCGACTAC 1587 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || || || |||| || ||| || | |||||| Sbjct 1586 AACATCCAGAAGGAGTCTACCCTTCACCTGGTCCTCCGTCTGCGTGGCGGC 1536 >seq3257 Length=1341 Score = 116 bits (128), Expect = 4e-21 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAA 38329 ||||| ||||||||| |||| || ||| | | |||| | | ||||| | || | || Sbjct 185 GGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATTGAAAACG-TCAAGGCCAA 127 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 |||| ||||| ||||| ||||| ||||||| ||||| || |||| ||||||||| || Sbjct 126 GATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCGGGCAAGCA 67 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 |||||| || | ||||| || ||||||||||||||| ||||| | || || || | Sbjct 66 GCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCACCT 7 Query 38450 GGTGCT 38455 ||| || Sbjct 6 GGTCCT 1 >seq2314 Length=1923 Score = 109 bits (120), Expect = 5e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 || ||| ||||||||| |||| ||||||||||| |||||||| |||||| || || Sbjct 1676 CAGGCAGGCAAAGTCGGTGTGCAGGCCCTCGTCCCGAGAAATGAGCTCGTTGGAAAAGGT 1735 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 | || |||||||||||||| ||||||||||| | |||||| ||| ||| || Sbjct 1736 GAGCCCCGGCATGAGGCCGCGCTTTTTGAGCCAGTAGATGGCGCAGAAGGCGCCGCTGAA 1795 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCT 133048 | || |||||| ||| ||| || |||| |||||||| Sbjct 1796 GTGGATGCCCTCCACGCACGCAAACGCCAGCAGGCGCT 1833 >seq55 Length=8980 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| | ||||| ||||| || || | ||| ||||| |||||||| Sbjct 4145 GACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAG 4086 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| |||||||| ||||||||||||||| ||||| | || || || |||| || Sbjct 4085 GACGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTC 4026 Query 38457 CGTTTGAGAGGCGGC 38471 || || | |||||| Sbjct 4025 CGCCTGCGCGGCGGC 4011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500137375261440