Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1180 300 2e-76 >seq1180 Length=3129 Score = 300 bits (332), Expect = 2e-76 Identities = 795/1210 (66%), Gaps = 23/1210 (2%) Strand=Plus/Minus Query 6881 TGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCC 6940 || || ||||| | || || ||||| || | || || | | ||||| | || || Sbjct 2501 TGCTCCTTCTTCGTGGGGATGGTCGTGTTGCGCGAGATGAGCACCGTCATCACGCCGCCG 2442 Query 6941 ATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGAT 7000 || ||||| || || || || || | ||||| | || | ||||| || || Sbjct 2441 GCCGTCTCGAGGCCCAGCGAGAGGGGGATGACGTCGAGCAGCAGGAGGTCCTGCACCTTC 2382 Query 7001 TCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCA 7060 |||| | || || | | ||||||||| || || | || ||||| || || ||||| Sbjct 2381 TCGTGCGTCTCGCCGTTGAGGATGGCGGCCTGCACGGCGGCGCCGTAGGCCACGGCCTCG 2322 Query 7061 TCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGA 7120 |||||||| || | || ||| || || ||||| || |||||| | || || Sbjct 2321 TCGGGGTTGATGCTCTTGCACAGCTCCTTGCCGTTGAAGTAATCCTGGAGCAGGGTCTGC 2262 Query 7121 ATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA---CTTTCGATTTA 7177 | || || || || || || || ||||| | || | || | | | ||| || Sbjct 2261 ACCTTGGGAATACGGGTGGAACCGCCGACGAGGACCACCTCGTGGATGGCCTTC---TTG 2205 Query 7178 TCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237 || ||||| | ||| || | || || || || ||||| || || ||||||| |||| Sbjct 2204 TCCATCTTGGCGTCGCGGATGACCTTCTCCACGGGGTCCATGCACTTGCGGAACAGGTCC 2145 Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297 || || ||||| || || || ||||| | ||| | ||||| || | ||| ||| | Sbjct 2144 ATGTTGAGCTCCTCGAAGCGAGCGCGGGTGAGGGACGAGTAGAAGTCGATGCCCTCGAAC 2085 Query 7298 AACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357 | ||| || || || | | | || | | || || | ||| ||||| |||||||| Sbjct 2084 AGCGAGTCGATCTCGAGCGAGGCCTGGGTGGAGGAGGACAGCGTGCGCTTCGCGCGCTCG 2025 Query 7358 CACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTA 7417 ||||| || || | || || ||||| || ||||| ||| | || |||| | || Sbjct 2024 CACGCGGTGCGAAGGCGGCGCAGGGCGCGGGGGTTGCCGCTGAGGTCACTCTTGTTCTTC 1965 Query 7418 CGTTTAAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAA 7476 | || ||||||| || | ||||| | || | || || || || || |||| Sbjct 1964 CTCTTGAACTCTTGCACA-AAGTGGTTCACCAGGCGGTTGTCAAAGTCCTCGCCGCCCAG 1906 Query 7477 GTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGA 7536 ||| || || || ||||| | ||||| || ||||| || | || ||| | | || || Sbjct 1905 GTGGGTGTCTCCGGCGGTGGACTTGACCTCGAAGATGCCCTCCTCGATGGTCAGCAGGGA 1846 Query 7537 AACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGT------C 7590 |||||||| || || || ||||| || || ||||| |||||| ||| || | Sbjct 1845 CACATCAAAGGTGCCGCCGCCCAGATCGAAGATGAGCACGTTCTGCTCGCCGGTGGTGAC 1786 Query 7591 TTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG 7650 || ||||| || || ||||| ||||| ||||| || || || || || || || || | Sbjct 1785 GTTCTTCTTGTCCAGGCCGTAGGCGATGGCCGCGGCGGTGGGCTCGTTGATGATGCGCAT 1726 Query 7651 ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAA 7710 || ||||| || || | || || || || || || || || || ||||| || Sbjct 1725 CACGTCGAGGCCGGCGATCACGCCGGCGTCCTTGGTGGCCTGGCGCTGGGAGTCGTTGAA 1666 Query 7711 GTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT------ACCGAGATACGATTC 7764 |||||| || || || || ||||| | | | || | ||| ||| | | ||| | Sbjct 1665 GTAGGCGGGCACGGTGACCACCGCCTTCTTCACCTCCTTGTCGGCACCCACAAACGCCTG 1606 Query 7765 CGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTT 7824 ||| || || ||||| || || ||||| || |||||||| || ||||||||||| || Sbjct 1605 CGCAATCTCCTTCATCTTCACCAGCACCATGGAGGAAATCTCCTCGGCCGCAAACTGCTT 1546 Query 7825 CGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTT 7884 | | || || || | || || || |||||||| || || || | |||| | ||||| Sbjct 1545 CTTCTCGCCCTTGTAGTCCACCTCGATCATGGGCTTCTCGGCCGACCCGGACACGACCTT 1486 Query 7885 ATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAG 7944 | | ||| | || ||||| || ||| | || ||||| | ||||| || Sbjct 1485 GAAGGGCCAGTGGCGCAGGTCGTCCTGCACCGCGGGCTCGCTGAACTTGCGGCCGATGAG 1426 Query 7945 ACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTC 8004 ||||| || || || || ||||| |||||||||| || |||||||| || ||||| Sbjct 1425 GCGCTTGGCGTCGAACACGGTGTTGATGGGGTTCATCGCCACCTGGTTCTTGGCGGCGTC 1366 Query 8005 CCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCC 8064 ||||| || || || | ||||| || || |||||||| || ||||| || || || Sbjct 1365 GCCGATCAGGCGCTC---CGTGTCCGTGAAGGCCACGTACGAGGGCGTCGTGCGGTTGCC 1309 Query 8065 TTGGTCGTTC 8074 || |||||| Sbjct 1308 CTGCTCGTTC 1299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635087816719440