Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1180 300 2e-76
>seq1180
Length=3129
Score = 300 bits (332), Expect = 2e-76
Identities = 795/1210 (66%), Gaps = 23/1210 (2%)
Strand=Plus/Minus
Query 6881 TGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCC 6940
|| || ||||| | || || ||||| || | || || | | ||||| | || ||
Sbjct 2501 TGCTCCTTCTTCGTGGGGATGGTCGTGTTGCGCGAGATGAGCACCGTCATCACGCCGCCG 2442
Query 6941 ATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGAT 7000
|| ||||| || || || || || | ||||| | || | ||||| || ||
Sbjct 2441 GCCGTCTCGAGGCCCAGCGAGAGGGGGATGACGTCGAGCAGCAGGAGGTCCTGCACCTTC 2382
Query 7001 TCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCA 7060
|||| | || || | | ||||||||| || || | || ||||| || || |||||
Sbjct 2381 TCGTGCGTCTCGCCGTTGAGGATGGCGGCCTGCACGGCGGCGCCGTAGGCCACGGCCTCG 2322
Query 7061 TCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGA 7120
|||||||| || | || ||| || || ||||| || |||||| | || ||
Sbjct 2321 TCGGGGTTGATGCTCTTGCACAGCTCCTTGCCGTTGAAGTAATCCTGGAGCAGGGTCTGC 2262
Query 7121 ATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA---CTTTCGATTTA 7177
| || || || || || || || ||||| | || | || | | | ||| ||
Sbjct 2261 ACCTTGGGAATACGGGTGGAACCGCCGACGAGGACCACCTCGTGGATGGCCTTC---TTG 2205
Query 7178 TCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237
|| ||||| | ||| || | || || || || ||||| || || ||||||| ||||
Sbjct 2204 TCCATCTTGGCGTCGCGGATGACCTTCTCCACGGGGTCCATGCACTTGCGGAACAGGTCC 2145
Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297
|| || ||||| || || || ||||| | ||| | ||||| || | ||| ||| |
Sbjct 2144 ATGTTGAGCTCCTCGAAGCGAGCGCGGGTGAGGGACGAGTAGAAGTCGATGCCCTCGAAC 2085
Query 7298 AACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357
| ||| || || || | | | || | | || || | ||| ||||| ||||||||
Sbjct 2084 AGCGAGTCGATCTCGAGCGAGGCCTGGGTGGAGGAGGACAGCGTGCGCTTCGCGCGCTCG 2025
Query 7358 CACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTA 7417
||||| || || | || || ||||| || ||||| ||| | || |||| | ||
Sbjct 2024 CACGCGGTGCGAAGGCGGCGCAGGGCGCGGGGGTTGCCGCTGAGGTCACTCTTGTTCTTC 1965
Query 7418 CGTTTAAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAA 7476
| || ||||||| || | ||||| | || | || || || || || ||||
Sbjct 1964 CTCTTGAACTCTTGCACA-AAGTGGTTCACCAGGCGGTTGTCAAAGTCCTCGCCGCCCAG 1906
Query 7477 GTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGA 7536
||| || || || ||||| | ||||| || ||||| || | || ||| | | || ||
Sbjct 1905 GTGGGTGTCTCCGGCGGTGGACTTGACCTCGAAGATGCCCTCCTCGATGGTCAGCAGGGA 1846
Query 7537 AACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGT------C 7590
|||||||| || || || ||||| || || ||||| |||||| ||| || |
Sbjct 1845 CACATCAAAGGTGCCGCCGCCCAGATCGAAGATGAGCACGTTCTGCTCGCCGGTGGTGAC 1786
Query 7591 TTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG 7650
|| ||||| || || ||||| ||||| ||||| || || || || || || || || |
Sbjct 1785 GTTCTTCTTGTCCAGGCCGTAGGCGATGGCCGCGGCGGTGGGCTCGTTGATGATGCGCAT 1726
Query 7651 ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAA 7710
|| ||||| || || | || || || || || || || || || ||||| ||
Sbjct 1725 CACGTCGAGGCCGGCGATCACGCCGGCGTCCTTGGTGGCCTGGCGCTGGGAGTCGTTGAA 1666
Query 7711 GTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT------ACCGAGATACGATTC 7764
|||||| || || || || ||||| | | | || | ||| ||| | | ||| |
Sbjct 1665 GTAGGCGGGCACGGTGACCACCGCCTTCTTCACCTCCTTGTCGGCACCCACAAACGCCTG 1606
Query 7765 CGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTT 7824
||| || || ||||| || || ||||| || |||||||| || ||||||||||| ||
Sbjct 1605 CGCAATCTCCTTCATCTTCACCAGCACCATGGAGGAAATCTCCTCGGCCGCAAACTGCTT 1546
Query 7825 CGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTT 7884
| | || || || | || || || |||||||| || || || | |||| | |||||
Sbjct 1545 CTTCTCGCCCTTGTAGTCCACCTCGATCATGGGCTTCTCGGCCGACCCGGACACGACCTT 1486
Query 7885 ATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAG 7944
| | ||| | || ||||| || ||| | || ||||| | ||||| ||
Sbjct 1485 GAAGGGCCAGTGGCGCAGGTCGTCCTGCACCGCGGGCTCGCTGAACTTGCGGCCGATGAG 1426
Query 7945 ACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTC 8004
||||| || || || || ||||| |||||||||| || |||||||| || |||||
Sbjct 1425 GCGCTTGGCGTCGAACACGGTGTTGATGGGGTTCATCGCCACCTGGTTCTTGGCGGCGTC 1366
Query 8005 CCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCC 8064
||||| || || || | ||||| || || |||||||| || ||||| || || ||
Sbjct 1365 GCCGATCAGGCGCTC---CGTGTCCGTGAAGGCCACGTACGAGGGCGTCGTGCGGTTGCC 1309
Query 8065 TTGGTCGTTC 8074
|| ||||||
Sbjct 1308 CTGCTCGTTC 1299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635087816719440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |