Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq114 181 1e-40 seq81 145 9e-30 seq60 129 7e-25 seq2314 123 3e-23 >seq114 Length=7431 Score = 181 bits (200), Expect = 1e-40 Identities = 559/859 (65%), Gaps = 7/859 (1%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || |||| || ||||| ||| || | || || | Sbjct 1688 CCGCAGCACATGCTGATGCGCGTGTCGATGGGCATCCACAAGGAGGACGTGGAGTCGGCG 1629 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || | || || || ||||| ||||| | || || |||||| Sbjct 1628 ATCGAGACGTACCACCTGCTGAGCCAGCGTTGGTTCACGCACGCGTCGCCGACGCTCTTC 1569 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || || || | || || || ||| || || | | || | |||| || Sbjct 1568 AACGCGGGCACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCCATGAAGGGCGAC 1509 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 ||| | ||||| |||| ||| |||| || || || ||| ||| | || || Sbjct 1508 AGCATCGAGGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGCAAGAGCGCGGGC 1449 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || |||||| ||||||| || || || | |||| ||| || | || || || Sbjct 1448 GGCATCGGGCTGCACATGCACGACATCCGCGCCACGGGGTCGTACATCCGGGGCACCAAC 1389 Query 111912 GGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 || | | || | || | | || ||||| ||||| || |||| ||| || || || || Sbjct 1388 GGCACGAGCA-ACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACGGCTCGGTACGT 1330 Query 111971 AAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027 |||| | || | |||||||| | | || || || || ||||| |||||||| Sbjct 1329 GGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAGCCCTGGCACGC 1270 Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCG 112087 ||| | ||||| | || || |||| ||||| || | |||||||| || ||| Sbjct 1269 GGACGTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCTCGCGCCCG 1210 Query 112088 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 112147 ||| || |||| || || ||||| || || || || |||||| | || |||| | || Sbjct 1209 CGACCTGTTCTACGGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTCGAGGCGGACGG 1150 Query 112148 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGA 112207 | ||| || || || || || |||| || || || | || | ||| || Sbjct 1149 GCAGTGGAGCCTGTTCTGCCCCAACGAGGCGCCGGGCCTGGCGGACGTGTGGGGCCCCGA 1090 Query 112208 GTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGC 112267 |||||| | |||||| | ||||||| || | || ||| |||| ||| || Sbjct 1089 GTTTGAGTCGCTCTACGCGCGGTACGAGCGCGAGGGCCGCGCGCGCAAGACGATGCGCGC 1030 Query 112268 TGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGC 112326 || | | ||||| || ||| | || | || || ||||| || || || || |||| Sbjct 1029 -GCAGCAGCTGTGGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCACGCCCTACATGC 971 Query 112327 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 112386 | ||||| |||||||| ||| ||||| || || |||| |||| ||||||| | Sbjct 970 TGTACAAGGACGCCTGCAACGCCAAGAGCAACCAGCAGAACCTGGGCACGATCAAGTGCA 911 Query 112387 CCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACC 112446 |||||| || || || ||| | || | || | | || |||||||| ||||| |||| Sbjct 910 GCAACCTGTGCACCGAGATCGTCGAGTACACGGCCCCCGACGAGACGGCCGTGTGCAACC 851 Query 112447 TCGCATCAATCGCTCTCCC 112465 |||| || ||||| || || Sbjct 850 TCGCCTCGATCGCGCTGCC 832 >seq81 Length=8194 Score = 145 bits (160), Expect = 9e-30 Identities = 298/437 (68%), Gaps = 7/437 (2%) Strand=Plus/Plus Query 176638 ACCTTTGGATGCCTTGATAATTGGTGTCACCATGGACACAACAAAACCC---AACTTGAG 176694 ||| |||| || ||||| || || ||||| | ||| | ||| ||| | |||||| Sbjct 946 ACCCTTGGTAGCTTTGATGATGGGGGTCACAAACTCCACCAAAAATCCCGGCAGCTTGAG 1005 Query 176695 AAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTC 176754 ||||| || | ||| ||| | || | |||||||||||||||||||| ||||| Sbjct 1006 CAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAGCCGTC 1065 Query 176755 GTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATA 176814 || || ||||||||||||||||||| | || || || ||| | | | || Sbjct 1066 GTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCGCTGTTGTTGTA 1125 Query 176815 GTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAA-CTCTTGGTTTGATG 176873 ||||| || || || || |||| ||||| ||||| | ||||| ||| ||| | Sbjct 1126 CTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGT-TTTGAATCTCGGCGTTGCCCG 1184 Query 176874 TGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACAC 176933 || ||| | | || ||||| || || || ||| || || || ||||| || | Sbjct 1185 AGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAACACTC 1244 Query 176934 CGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCAC 176993 ||||| ||||||| || ||||| || || ||||| || || || || || || || || | Sbjct 1245 CGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGAGTCTC 1304 Query 176994 CCTCTGTCACGATGAGTGTACACTTGCCAGA-TTGTGCCGTACCCGCCTTGTTCGCATCA 177052 |||| || | |||||| || |||| | || ||| ||| ||||| | ||| || || Sbjct 1305 CCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCC-CGCCCGCGTCGTTTGCGTCG 1363 Query 177053 TCCAATTTGGGAATACC 177069 || | |||||||| || Sbjct 1364 TCGAGCTTGGGAATGCC 1380 Score = 82.4 bits (90), Expect = 9e-11 Identities = 164/243 (67%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077 || ||||| || ||| || ||||| ||||||||||| |||| | || |||| Sbjct 335 GCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGACCCTGCGGCACCAGGTAGTTGACG 394 Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137 ||||| || |||| |||| | || | || || ||| || ||| ||| || Sbjct 395 TTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACGATGGTGCCCATGAGGGAGGTCTCG 454 Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 176197 ||||| |||||||| |||||||| || || | |||||| |||||| || || || || Sbjct 455 CCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCCCGCCAGCTGCGCGACCTTGATGTCC 514 Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257 | ||| || || | ||| || || ||| | |||||| ||| || ||||| || Sbjct 515 TTCTTCAGGTTGCGCTTGAAGCAGGCAAACAGGATCTTGCGCTGCCCGGGTTTGAGCCCG 574 Query 176258 TCC 176260 ||| Sbjct 575 TCC 577 >seq60 Length=8765 Score = 129 bits (142), Expect = 7e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 |||||| ||||| || | || |||||||| || ||||| || |||||| || ||| Sbjct 2593 CTTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTT 2652 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||| | || || ||| |||||||||| ||||||||||| || ||| ||| |||||||| Sbjct 2653 CTGCTCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCAACGA 2712 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| ||||||||||| ||||| || ||| || ||||| Sbjct 2713 GCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGC 2751 >seq2314 Length=1923 Score = 123 bits (136), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 |||||||| |||| || | || |||||||| || ||||| ||| |||| || || Sbjct 1843 TCCTTTGCGCAGCGCCTGCTGGCGTTTGCGTGCGTGGAGGGCATCCACTTCAGCGGCGCC 1784 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || || |||||||| ||||| || |||||||| || ||| ||| |||||| Sbjct 1783 TTCTGCGCCATCTACTGGCTCAAAAAGCGCGGCCTCATGCCGGGGCTCACCTTTTCCAAC 1724 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| || ||||| |||||||| || ||| || ||||| Sbjct 1723 GAGCTCATTTCTCGGGACGAGGGCCTGCACACCGACTTTGC 1683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620698435919520