Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq114 181 1e-40
seq81 145 9e-30
seq60 129 7e-25
seq2314 123 3e-23
>seq114
Length=7431
Score = 181 bits (200), Expect = 1e-40
Identities = 559/859 (65%), Gaps = 7/859 (1%)
Strand=Plus/Minus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| | ||||| || |||| || ||||| ||| || | || || |
Sbjct 1688 CCGCAGCACATGCTGATGCGCGTGTCGATGGGCATCCACAAGGAGGACGTGGAGTCGGCG 1629
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
| ||||| ||| || | || || || ||||| ||||| | || || ||||||
Sbjct 1628 ATCGAGACGTACCACCTGCTGAGCCAGCGTTGGTTCACGCACGCGTCGCCGACGCTCTTC 1569
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
||||| || || || | || || || ||| || || | | || | |||| ||
Sbjct 1568 AACGCGGGCACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCCATGAAGGGCGAC 1509
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851
||| | ||||| |||| ||| |||| || || || ||| ||| | || ||
Sbjct 1508 AGCATCGAGGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGCAAGAGCGCGGGC 1449
Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911
|| |||||| ||||||| || || || | |||| ||| || | || || ||
Sbjct 1448 GGCATCGGGCTGCACATGCACGACATCCGCGCCACGGGGTCGTACATCCGGGGCACCAAC 1389
Query 111912 GGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970
|| | | || | || | | || ||||| ||||| || |||| ||| || || || ||
Sbjct 1388 GGCACGAGCA-ACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACGGCTCGGTACGT 1330
Query 111971 AAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027
|||| | || | |||||||| | | || || || || ||||| ||||||||
Sbjct 1329 GGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAGCCCTGGCACGC 1270
Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCG 112087
||| | ||||| | || || |||| ||||| || | |||||||| || |||
Sbjct 1269 GGACGTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCTCGCGCCCG 1210
Query 112088 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 112147
||| || |||| || || ||||| || || || || |||||| | || |||| | ||
Sbjct 1209 CGACCTGTTCTACGGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTCGAGGCGGACGG 1150
Query 112148 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGA 112207
| ||| || || || || || |||| || || || | || | ||| ||
Sbjct 1149 GCAGTGGAGCCTGTTCTGCCCCAACGAGGCGCCGGGCCTGGCGGACGTGTGGGGCCCCGA 1090
Query 112208 GTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGC 112267
|||||| | |||||| | ||||||| || | || ||| |||| ||| ||
Sbjct 1089 GTTTGAGTCGCTCTACGCGCGGTACGAGCGCGAGGGCCGCGCGCGCAAGACGATGCGCGC 1030
Query 112268 TGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGC 112326
|| | | ||||| || ||| | || | || || ||||| || || || || ||||
Sbjct 1029 -GCAGCAGCTGTGGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCACGCCCTACATGC 971
Query 112327 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 112386
| ||||| |||||||| ||| ||||| || || |||| |||| ||||||| |
Sbjct 970 TGTACAAGGACGCCTGCAACGCCAAGAGCAACCAGCAGAACCTGGGCACGATCAAGTGCA 911
Query 112387 CCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACC 112446
|||||| || || || ||| | || | || | | || |||||||| ||||| ||||
Sbjct 910 GCAACCTGTGCACCGAGATCGTCGAGTACACGGCCCCCGACGAGACGGCCGTGTGCAACC 851
Query 112447 TCGCATCAATCGCTCTCCC 112465
|||| || ||||| || ||
Sbjct 850 TCGCCTCGATCGCGCTGCC 832
>seq81
Length=8194
Score = 145 bits (160), Expect = 9e-30
Identities = 298/437 (68%), Gaps = 7/437 (2%)
Strand=Plus/Plus
Query 176638 ACCTTTGGATGCCTTGATAATTGGTGTCACCATGGACACAACAAAACCC---AACTTGAG 176694
||| |||| || ||||| || || ||||| | ||| | ||| ||| | ||||||
Sbjct 946 ACCCTTGGTAGCTTTGATGATGGGGGTCACAAACTCCACCAAAAATCCCGGCAGCTTGAG 1005
Query 176695 AAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTC 176754
||||| || | ||| ||| | || | |||||||||||||||||||| |||||
Sbjct 1006 CAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAGCCGTC 1065
Query 176755 GTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATA 176814
|| || ||||||||||||||||||| | || || || ||| | | | ||
Sbjct 1066 GTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCGCTGTTGTTGTA 1125
Query 176815 GTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAA-CTCTTGGTTTGATG 176873
||||| || || || || |||| ||||| ||||| | ||||| ||| ||| |
Sbjct 1126 CTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGT-TTTGAATCTCGGCGTTGCCCG 1184
Query 176874 TGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACAC 176933
|| ||| | | || ||||| || || || ||| || || || ||||| || |
Sbjct 1185 AGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAACACTC 1244
Query 176934 CGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCAC 176993
||||| ||||||| || ||||| || || ||||| || || || || || || || || |
Sbjct 1245 CGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGAGTCTC 1304
Query 176994 CCTCTGTCACGATGAGTGTACACTTGCCAGA-TTGTGCCGTACCCGCCTTGTTCGCATCA 177052
|||| || | |||||| || |||| | || ||| ||| ||||| | ||| || ||
Sbjct 1305 CCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCC-CGCCCGCGTCGTTTGCGTCG 1363
Query 177053 TCCAATTTGGGAATACC 177069
|| | |||||||| ||
Sbjct 1364 TCGAGCTTGGGAATGCC 1380
Score = 82.4 bits (90), Expect = 9e-11
Identities = 164/243 (67%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077
|| ||||| || ||| || ||||| ||||||||||| |||| | || ||||
Sbjct 335 GCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGACCCTGCGGCACCAGGTAGTTGACG 394
Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137
||||| || |||| |||| | || | || || ||| || ||| ||| ||
Sbjct 395 TTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACGATGGTGCCCATGAGGGAGGTCTCG 454
Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 176197
||||| |||||||| |||||||| || || | |||||| |||||| || || || ||
Sbjct 455 CCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCCCGCCAGCTGCGCGACCTTGATGTCC 514
Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257
| ||| || || | ||| || || ||| | |||||| ||| || ||||| ||
Sbjct 515 TTCTTCAGGTTGCGCTTGAAGCAGGCAAACAGGATCTTGCGCTGCCCGGGTTTGAGCCCG 574
Query 176258 TCC 176260
|||
Sbjct 575 TCC 577
>seq60
Length=8765
Score = 129 bits (142), Expect = 7e-25
Identities = 124/159 (78%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232
|||||| ||||| || | || |||||||| || ||||| || |||||| || |||
Sbjct 2593 CTTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTT 2652
Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292
|||| | || || ||| |||||||||| ||||||||||| || ||| ||| ||||||||
Sbjct 2653 CTGCTCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCAACGA 2712
Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||| ||||||||||| ||||| || ||| || |||||
Sbjct 2713 GCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGC 2751
>seq2314
Length=1923
Score = 123 bits (136), Expect = 3e-23
Identities = 124/161 (77%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
|||||||| |||| || | || |||||||| || ||||| ||| |||| || ||
Sbjct 1843 TCCTTTGCGCAGCGCCTGCTGGCGTTTGCGTGCGTGGAGGGCATCCACTTCAGCGGCGCC 1784
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
|||||||| || || |||||||| ||||| || |||||||| || ||| ||| ||||||
Sbjct 1783 TTCTGCGCCATCTACTGGCTCAAAAAGCGCGGCCTCATGCCGGGGCTCACCTTTTCCAAC 1724
Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||||| || ||||| |||||||| || ||| || |||||
Sbjct 1723 GAGCTCATTTCTCGGGACGAGGGCCTGCACACCGACTTTGC 1683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620698435919520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |