Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq114 230 3e-55
seq81 156 5e-33
seq60 127 2e-24
seq2314 105 8e-18
>seq114
Length=7431
Score = 230 bits (254), Expect = 3e-55
Identities = 567/854 (66%), Gaps = 11/854 (1%)
Strand=Plus/Plus
Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516
|| || ||||| || || | ||||| || |||||||| || | |||||||| |
Sbjct 832 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACG 891
Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576
|| || || |||| |||| | ||| ||||| |||| |||| ||||| ||||| |
Sbjct 892 ATCTCGGTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCG 951
Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636
||||| || |||||||| |||||||||||||| |||||||||||||| | || | |||
Sbjct 952 TTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATG 1011
Query 106637 GCCTTCCACACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTAC 106693
|| | |||| | || || | | || | ||| || || ||||| |||||||
Sbjct 1012 GCGAAC--CACAGCTGCTGCGCGCGC-ATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTAC 1068
Query 106694 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 106753
| |||||| | |||||||| ||| | |||| | || || || |||| ||
Sbjct 1069 CGCGCGTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTG 1128
Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813
|| ||||| || ||| || || || |||| || |||||||| || ||||| || |||
Sbjct 1129 GGGCAGAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATC 1188
Query 106814 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873
||||| | || || || | |||||||| || | || ||||| || |
Sbjct 1189 CACAGCCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGG 1248
Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 106933
|| || | ||||| | ||||||||||| ||||| || || || || | | |||||
Sbjct 1249 TCCAGCCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTG 1308
Query 106934 CG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 106990
|| | || | || | || || || || ||| |||| || ||||| ||||| ||
Sbjct 1309 CGCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGC 1368
Query 106991 ATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 107049
| | || | || | | || || || ||||| || || |||| | | ||
Sbjct 1369 ACCACGCCGT-TGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTC 1427
Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109
|| ||||||| ||| || || || || | ||| ||| ||| |||||| | || ||
Sbjct 1428 GTGCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGT 1487
Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169
| ||||| || | ||| ||| |||| |||| | | ||||| ||| || |||
Sbjct 1488 GTCGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTG 1547
Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGA 107229
||| | || || || || |||||||| || || | ||||| ||||| || |||
Sbjct 1548 CGGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCT 1607
Query 107230 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCAC 107289
|| | || ||| ||||| | | || || | ||| ||| ||||||||| || | |||
Sbjct 1608 CAGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACAC 1667
Query 107290 ACGCATAAACATGT 107303
||||| | |||||
Sbjct 1668 GCGCATCAGCATGT 1681
>seq81
Length=8194
Score = 156 bits (172), Expect = 5e-33
Identities = 304/441 (69%), Gaps = 15/441 (3%)
Strand=Plus/Plus
Query 169088 ACCCTTGGAAGCCTTGATGATTGGTGTCACCATAGAAACCACGAAACCC---AACTTGAG 169144
|||||||| ||| |||||||| || ||||| | |||| || ||| | ||||||
Sbjct 946 ACCCTTGGTAGCTTTGATGATGGGGGTCACAAACTCCACCAAAAATCCCGGCAGCTTGAG 1005
Query 169145 AAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATC 169204
|||||||| | ||| ||| | || | |||||||||||||||||| || || ||
Sbjct 1006 CAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAGCCGTC 1065
Query 169205 ATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAA--GTTCAGAAACATCTTG- 169261
| || ||| ||||| ||||| ||| | || ||||| | || | | | |||
Sbjct 1066 GTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCG----CTGTTGT 1121
Query 169262 -GTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAA-CTCTTGGTTT 169319
||| || || || || || || |||| ||||| ||||| | ||||| ||| |||
Sbjct 1122 TGTACTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGT-TTTGAATCTCGGCGTTG 1180
Query 169320 GATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAG 169379
| || ||| ||| | ||||| || || || || ||| || ||||| || ||
Sbjct 1181 CCCGAGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAAC 1240
Query 169380 ACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAA 169439
|| || ||| |||| || || || || || || ||||| || || || || || || ||
Sbjct 1241 ACTCCGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGAG 1300
Query 169440 TCACCCTCCGTGACAATGAGGGTACACTTTCCAGA-TTGCGCCGTACCCGCCTTGTTTGC 169498
|| ||||| |||| |||||||| |||| || ||||||| ||||| | ||||||
Sbjct 1301 TCTCCCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCC-CGCCCGCGTCGTTTGC 1359
Query 169499 GTCGTCCAACTTGGGAATACC 169519
|||||| | ||||||||| ||
Sbjct 1360 GTCGTCGAGCTTGGGAATGCC 1380
>seq60
Length=8765
Score = 127 bits (140), Expect = 2e-24
Identities = 304/455 (67%), Gaps = 16/455 (4%)
Strand=Plus/Minus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| || || |||||||| || ||||||||||| || | || ||| |||||
Sbjct 3039 TAGTCTCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 2980
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACCC----CAACTTGTTTGAGG 117099
|||| || ||||| | ||||| | | | || |||||| | || |||
Sbjct 2979 CAGTCGAACGGATTGGTGGCGTTGTAGAGCTTGGGCGCACCCAGGGCGAC------GAGC 2926
Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159
|| || || |||| |||||||||||| | |||| || |||||| |||||||||
Sbjct 2925 AGCCGGTCGCTCACAAACTCAATGTACTGGCTCATCAGCTTGCCGTTCATGCCGATGAGA 2866
Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219
| || || || || ||| ||| | ||||| || || || ||||| |||||
Sbjct 2865 TCCACCGGCAGGGCATCGCAGACAAACTCCTTCTCGATTTCCACGGCCTCGCCCACGAGC 2806
Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTCCACGGCAA 117277
|| | | ||| | | | | | | | | | | | || ||||| |||||
Sbjct 2805 TGGTTCAGACGCTCGATGGCGAG-CGGGTGCTCGA-GCATGGAGTAGAGCAGGCAGGCAA 2748
Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337
| || ||| || |||||||| || || || || || || || ||| ||||| ||||
Sbjct 2747 AGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCCGGGCA 2688
Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397
||||||| |||||||| | ||| || || | |||||| ||| |||||| || ||||
Sbjct 2687 TGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGAAGAAAATGCCCT 2628
Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432
|||| ||||||||||| | |||||||| || |||
Sbjct 2627 CCACGCACGCAAACGCCACCAGGCGCTCCGCAAAG 2593
>seq2314
Length=1923
Score = 105 bits (116), Expect = 8e-18
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || ||| || ||||| || || ||||| || || || || ||| || ||
Sbjct 1682 GGCAAAGTCGGTGTGCAGGCCCTCGTCCCGAGAAATGAGCTCGTTGGAAAAGGTGAGCCC 1741
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392
|||||||| || ||||| || | ||| || || |||||||| | ||| |||| |||
Sbjct 1742 CGGCATGAGGCCGCGCTTTTTGAGCCAGTAGATGGCGCAGAAGGCGCCGCTGAAGTGGAT 1801
Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAG 117435
|||||||| ||||||||||| | ||||||| || ||||||
Sbjct 1802 GCCCTCCACGCACGCAAACGCCAGCAGGCGCTGCGCAAAGGAG 1844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589939014609840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |