Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq114 230 3e-55 seq81 156 5e-33 seq60 127 2e-24 seq2314 105 8e-18 >seq114 Length=7431 Score = 230 bits (254), Expect = 3e-55 Identities = 567/854 (66%), Gaps = 11/854 (1%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || ||||| || || | ||||| || |||||||| || | |||||||| | Sbjct 832 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACG 891 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||| |||| | ||| ||||| |||| |||| ||||| ||||| | Sbjct 892 ATCTCGGTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCG 951 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| || |||||||| |||||||||||||| |||||||||||||| | || | ||| Sbjct 952 TTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATG 1011 Query 106637 GCCTTCCACACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTAC 106693 || | |||| | || || | | || | ||| || || ||||| ||||||| Sbjct 1012 GCGAAC--CACAGCTGCTGCGCGCGC-ATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTAC 1068 Query 106694 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 106753 | |||||| | |||||||| ||| | |||| | || || || |||| || Sbjct 1069 CGCGCGTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTG 1128 Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 || ||||| || ||| || || || |||| || |||||||| || ||||| || ||| Sbjct 1129 GGGCAGAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATC 1188 Query 106814 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 ||||| | || || || | |||||||| || | || ||||| || | Sbjct 1189 CACAGCCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGG 1248 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 106933 || || | ||||| | ||||||||||| ||||| || || || || | | ||||| Sbjct 1249 TCCAGCCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTG 1308 Query 106934 CG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 106990 || | || | || | || || || || ||| |||| || ||||| ||||| || Sbjct 1309 CGCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGC 1368 Query 106991 ATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 107049 | | || | || | | || || || ||||| || || |||| | | || Sbjct 1369 ACCACGCCGT-TGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTC 1427 Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109 || ||||||| ||| || || || || | ||| ||| ||| |||||| | || || Sbjct 1428 GTGCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGT 1487 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 | ||||| || | ||| ||| |||| |||| | | ||||| ||| || ||| Sbjct 1488 GTCGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTG 1547 Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGA 107229 ||| | || || || || |||||||| || || | ||||| ||||| || ||| Sbjct 1548 CGGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCT 1607 Query 107230 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCAC 107289 || | || ||| ||||| | | || || | ||| ||| ||||||||| || | ||| Sbjct 1608 CAGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACAC 1667 Query 107290 ACGCATAAACATGT 107303 ||||| | ||||| Sbjct 1668 GCGCATCAGCATGT 1681 >seq81 Length=8194 Score = 156 bits (172), Expect = 5e-33 Identities = 304/441 (69%), Gaps = 15/441 (3%) Strand=Plus/Plus Query 169088 ACCCTTGGAAGCCTTGATGATTGGTGTCACCATAGAAACCACGAAACCC---AACTTGAG 169144 |||||||| ||| |||||||| || ||||| | |||| || ||| | |||||| Sbjct 946 ACCCTTGGTAGCTTTGATGATGGGGGTCACAAACTCCACCAAAAATCCCGGCAGCTTGAG 1005 Query 169145 AAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATC 169204 |||||||| | ||| ||| | || | |||||||||||||||||| || || || Sbjct 1006 CAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAGCCGTC 1065 Query 169205 ATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAA--GTTCAGAAACATCTTG- 169261 | || ||| ||||| ||||| ||| | || ||||| | || | | | ||| Sbjct 1066 GTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCG----CTGTTGT 1121 Query 169262 -GTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAA-CTCTTGGTTT 169319 ||| || || || || || || |||| ||||| ||||| | ||||| ||| ||| Sbjct 1122 TGTACTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGT-TTTGAATCTCGGCGTTG 1180 Query 169320 GATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAG 169379 | || ||| ||| | ||||| || || || || ||| || ||||| || || Sbjct 1181 CCCGAGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAAC 1240 Query 169380 ACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAA 169439 || || ||| |||| || || || || || || ||||| || || || || || || || Sbjct 1241 ACTCCGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGAG 1300 Query 169440 TCACCCTCCGTGACAATGAGGGTACACTTTCCAGA-TTGCGCCGTACCCGCCTTGTTTGC 169498 || ||||| |||| |||||||| |||| || ||||||| ||||| | |||||| Sbjct 1301 TCTCCCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCC-CGCCCGCGTCGTTTGC 1359 Query 169499 GTCGTCCAACTTGGGAATACC 169519 |||||| | ||||||||| || Sbjct 1360 GTCGTCGAGCTTGGGAATGCC 1380 >seq60 Length=8765 Score = 127 bits (140), Expect = 2e-24 Identities = 304/455 (67%), Gaps = 16/455 (4%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || |||||||| || ||||||||||| || | || ||| ||||| Sbjct 3039 TAGTCTCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 2980 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACCC----CAACTTGTTTGAGG 117099 |||| || ||||| | ||||| | | | || |||||| | || ||| Sbjct 2979 CAGTCGAACGGATTGGTGGCGTTGTAGAGCTTGGGCGCACCCAGGGCGAC------GAGC 2926 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 || || || |||| |||||||||||| | |||| || |||||| ||||||||| Sbjct 2925 AGCCGGTCGCTCACAAACTCAATGTACTGGCTCATCAGCTTGCCGTTCATGCCGATGAGA 2866 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 | || || || || ||| ||| | ||||| || || || ||||| ||||| Sbjct 2865 TCCACCGGCAGGGCATCGCAGACAAACTCCTTCTCGATTTCCACGGCCTCGCCCACGAGC 2806 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTCCACGGCAA 117277 || | | ||| | | | | | | | | | | | || ||||| ||||| Sbjct 2805 TGGTTCAGACGCTCGATGGCGAG-CGGGTGCTCGA-GCATGGAGTAGAGCAGGCAGGCAA 2748 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | || ||| || |||||||| || || || || || || || ||| ||||| |||| Sbjct 2747 AGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCCGGGCA 2688 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 ||||||| |||||||| | ||| || || | |||||| ||| |||||| || |||| Sbjct 2687 TGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGAAGAAAATGCCCT 2628 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 |||| ||||||||||| | |||||||| || ||| Sbjct 2627 CCACGCACGCAAACGCCACCAGGCGCTCCGCAAAG 2593 >seq2314 Length=1923 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| || ||||| || || ||||| || || || || ||| || || Sbjct 1682 GGCAAAGTCGGTGTGCAGGCCCTCGTCCCGAGAAATGAGCTCGTTGGAAAAGGTGAGCCC 1741 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||||||| || ||||| || | ||| || || |||||||| | ||| |||| ||| Sbjct 1742 CGGCATGAGGCCGCGCTTTTTGAGCCAGTAGATGGCGCAGAAGGCGCCGCTGAAGTGGAT 1801 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAG 117435 |||||||| ||||||||||| | ||||||| || |||||| Sbjct 1802 GCCCTCCACGCACGCAAACGCCAGCAGGCGCTGCGCAAAGGAG 1844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589939014609840