Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2296 219 3e-52 seq74 86.0 5e-12 >seq2296 Length=1937 Score = 219 bits (242), Expect = 3e-52 Identities = 460/679 (68%), Gaps = 14/679 (2%) Strand=Plus/Plus Query 29786 TCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGG 29845 ||| |||||| ||| || || || ||||| | ||||||||| ||||| || ||| Sbjct 88 TCTGGAGCTGTTCCTTGAGGGGCTCGACGTGGTTGGCGTAGACGTGGGCGTCGCCGAGGA 147 Query 29846 TGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAG 29905 ||| | |||||| || || || ||| ||| || || | |||| |||||||| | Sbjct 148 CGTGAAAAAACTCCCCTGGGCGGAGGCCGCAGACCTGGGCGAGCATGCGGGTGAGGAGGG 207 Query 29906 AGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCT 29965 |||| |||||||| ||||| || || || || | ||| |||| | |||||| | Sbjct 208 CGTAGGAAGCGATGTTGAAGGGCACGCCCAGGCCGAGGTCTGCCGAGCGCTGGTACATGG 267 Query 29966 GACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAG 30025 || ||||||||||| | |||| | ||||| | |||||| || || || | Sbjct 268 AGCAGGAGAGCTCTCCCCGGGCCACGAAGAACTGGGCGAGCACGTGGCAGGGCGGCAGGG 327 Query 30026 CCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 30085 |||| | | | | |||||||||||||||| | | | ||||| ||| |||| Sbjct 328 CCATTTGCGGGATGGCGGTGGGGTTCCAGGCGCAGAGCAGCAGGCGCCGGTCGCAGGGGT 387 Query 30086 TGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145 || || ||||| ||| || || | ||| ||||| ||| ||| | ||||| | Sbjct 388 TGGTCTTGATGCGGTGGACTAGGTCGGCAACCTGGTCCACGCCCTGCCCGGCATAGTCGG 447 Query 30146 CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30205 | |||||| | ||| | || || || || | |||||| || |||||||| || |||| Sbjct 448 CGTGCATGTCGGCGTAGGCGGCGCCAAAGTGGCGCCACTGAAAGCCGTACACGGGCCCCA 507 Query 30206 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30265 ||| ||||| || | ||||| | |||| | ||||| ||| | | ||| |||||| Sbjct 508 AGTCGCCCTCCTCGCGGTGCTGCAGGCCCAGCGAGTCCAGAAAAGCGCGGGATCCGTTGC 567 Query 30266 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT-TTGGAGTTTGTGGACCCTCTGACG 30324 ||||||| || || ||||| | ||| ||| |||| || ||||| || | | Sbjct 568 CGTCCCAAATGCCCACGCCCTTGGCCTTGAG-TCTGTTGGCGTCGGTGGAGCCCGCCAGG 626 Query 30325 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30384 ||||| |||||||| ||||| ||| | ||| || || | |||||| || || || ||| Sbjct 627 AACCAGAGCAGCTCTTCCACCACGCCGCGCCAGAACACGCGCTTGGTGGTAAGCAGCGGA 686 Query 30385 AA-CTGTCCC-----TTGAGGCCGTACATGGCCTGAGAACCAAACACGGACAAGACTCCC 30438 || |||| || |||| || ||||| || | ||||||||| | || |||| Sbjct 687 AAGCTGTGCCGCAGGTTGAAGC---GCATGG--TGCG-ACCAAACACCGCCAGCGTTCCC 740 Query 30439 GTGCCCGTCCTGTCTCCCC 30457 ||||| |||| ||||||| Sbjct 741 GTGCCGGTCCGATCTCCCC 759 >seq74 Length=8418 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 52056 GGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGGGACGTGCGGAGCCGTCCTGACCCA 52114 |||||||||||||| ||| ||||| |||||||| || ||| | | ||||| Sbjct 6366 GGCGACAAGTTTGCCTCGAGACACGGA-CAAAAGGGCACCATCGGCATCACCTACACCCA 6424 Query 52115 GGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGC 52174 |||||||||||| || | | | || | ||||||||||||||||||||||||||||| Sbjct 6425 GGAGGACATGCCTTTTTCCGCGCAGGGCATCGTGCCCGACCTCATCATCAACCCCCACGC 6484 Query 52175 CTTTCCATCCAGGATGACC 52193 | | || || | |||||| Sbjct 6485 CATCCCCTCGCGCATGACC 6503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408589383167018