Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq114 306 7e-78 seq60 154 3e-32 seq2314 107 4e-18 >seq114 Length=7431 Score = 306 bits (338), Expect = 7e-78 Identities = 1026/1587 (65%), Gaps = 90/1587 (6%) Strand=Plus/Plus Query 212705 CTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGA 212764 ||| |||||||| ||| | | | | | ||| ||||||||||| | | | | ||| Sbjct 21 CTGGCTCTGGTCGATGTAGGCGCCGCGGTCGGCGGCCATGTCGACCAGCACGCGCTGCTT 80 Query 212765 GAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTG 212824 || ||||||||| |||||| | | | ||||||||||| || | | || || | Sbjct 81 GATCTCCCACACCGTCTTGTACAGGCCCTTGAGGTCCTCGGGCACGTCGAGGGC---CGC 137 Query 212825 CACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATG---TCCTCGTTCCAGAGGCCCCT 212881 ||| ||||| | ||| || || | || | | || || ||| |||||| ||| Sbjct 138 CACCGACCCGCCGTG---GGCCACCAGCTCGTTCTTGAGGTCGGCGTCCCAGAGCCCCAG 194 Query 212882 GGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCT 212941 | | ||| | | |||||| ||||||| | ||| || || |||||||| | Sbjct 195 GCGCGTGAGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAACTCGCCCGAGAGCACGCG 254 Query 212942 CCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGC 213001 | | ||| | ||| ||||||||||||| || ||||||||| |||| ||||| Sbjct 255 GCGCACGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGCT 314 Query 213002 AGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGAT 213061 ||||| || ||||||||||| |||||||| || ||| | || |||||||||| | Sbjct 315 GGTGCTCGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCAGCCCGTGCTCGCGCAC 374 Query 213062 GAGGCGC-CGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCC 213120 | | ||| || || | |||||||||| | || | || | | ||||| || Sbjct 375 G-GTCGCGCGCAGGGCCTCCCAGTCCCACCGCCC------GCTCTGGGGCGTCACGCCCC 427 Query 213121 ACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGC 213180 ||| ||| ||||| |||| | | | | || || ||| | ||| || | Sbjct 428 ACAGGTCGTGCTGCAGCTTGCCCTGGGACGCCGGAGACCCGGCGTAGGTCTCGTACGGCC 487 Query 213181 CAT-GCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAAT 213239 | | || | ||| |||||||| || | |||| || |||||||||| ||| || || Sbjct 488 CGTCGCGGCG-GGCGAGCTCGCACGAGGTGCGCAGCGCGGCGTAGTAGACGGTCTCGAAG 546 Query 213240 ATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAA-GGGCATCATCATGCGTTGGAA 213298 || || | |||||||| | |||||| ||| ||| || |||||| || | ||| Sbjct 547 ATGTCGCGGTTGAGCTGCGCGGCCTC-GGGCCCGTCAAAGGGCATGCCCAGCAGGATGAA 605 Query 213299 CACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGA 213358 | || ||||| ||||| || || | ||||||||| | ||| | ||||| || Sbjct 606 GGCGTCGGCCAGGCCCTGCACGCCCAGGCCGATGGGGCGGTGCCGGAGGTTG--CT---- 659 Query 213359 GCACTCCTCC------AAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGT 213412 || ||| || | |||||| |||| ||||||||| ||| |||||||| || Sbjct 660 GCGCTCGGCCGCGGGGACGGGGTAGTGGTTGACGTCGATGATGCGGTTCAGGTTGCGCGT 719 Query 213413 GGCCACTTTGGTGACATGGGCCAG---GT---ACTCGT------GATTGAACACGT---- 213456 ||||| ||| | ||||| || | ||| | || | ||| Sbjct 720 CGCCACCGACACGACCTCCGCCAGCCGGTCAAAGTCGAAGCGGCGCGTGGCCGCGTCCAA 779 Query 213457 --AGCCC---------------------------CCGTCCTGCACAAACTCAGGCAGGGC 213487 ||||| ||||||| || || ||||| || Sbjct 780 GGAGCCCACGAGCTTGCGGCCCTCGCGGCCCTGGCCGTCCTTGACGAAGCGCGGCAGCGC 839 Query 213488 GATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGT 213547 ||| ||| |||||||| |||||| ||| | | | | |||||||| | ||||||||| Sbjct 840 GATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCGGT 899 Query 213548 GCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA 213607 ||||||||||||||| ||| |||||||||||||| ||||| ||| |||||| | Sbjct 900 GCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAGGC 959 Query 213608 ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCA 213667 |||||||| ||||||||||| | || ||||| ||| | | ||| || | ||| Sbjct 960 GTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAACCA 1019 Query 213668 GAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGT 213726 || | | || | || | | || || | || | | || ||||||| | ||| Sbjct 1020 CAGCTGCTGCGC---GCGCATCGTCTTGCGCGCGC-GGCCCTCGCGCTCGTACCGCGCGT 1075 Query 213727 AGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA--CAGGATGCGGGACA 213784 ||||| | || ||| ||||||| || |||| ||||| | | || || || Sbjct 1076 AGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGG--CA 1133 Query 213785 CATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAG 213844 | |||||||| | |||||| | ||| | || ||| |||||||| |||| |||||| Sbjct 1134 GAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAG 1193 Query 213845 CGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAG 213904 | || ||||||||| | || | ||| ||| || ||| |||||||| || || Sbjct 1194 CCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAG 1253 Query 213905 AAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT 213964 |||| | | |||||||||||| ||||||| ||| | |||||||||||| | ||| Sbjct 1254 CCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTT 1313 Query 213965 ---GCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAG 214021 ||||||||||||||| || ||| |||||| | |||||| | ||| |||| Sbjct 1314 GCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCAC 1373 Query 214022 CCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCAT 214081 |||||| | |||||||| ||| || ||||| || | ||| | | || | ||| Sbjct 1374 GCCGTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTCGTGCAT 1433 Query 214082 GGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCAT 214141 | ||||| ||||| || ||| |||| ||| ||||| | | | || || Sbjct 1434 GTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTGTCGTA 1493 Query 214142 GATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCT 214201 |||||| | |||||||| | | | | || ||| |||||||| ||||| || | Sbjct 1494 GATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCGGGCG 1553 Query 214202 GGACGAGCCAGAGTTGAAAAGCGTGGG 214228 || | ||| | |||||| ||||| || Sbjct 1554 GGGGGTGCCCGCGTTGAAGAGCGTCGG 1580 >seq60 Length=8765 Score = 154 bits (170), Expect = 3e-32 Identities = 361/539 (67%), Gaps = 12/539 (2%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 |||||||| || || | ||||| || ||||| ||||| |||| || ||||||| |||| Sbjct 3042 TGGTAGTCTCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCC 2983 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 || || ||| || |||| | ||| || | | | | |||| | ||||| Sbjct 2982 ATCCAGTCGAACGGATTGGTGGCGTTGTAGAGCTTGGGCGCACCCAGGGCGACGAGCAGC 2923 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGAC 48019 | || || |||| ||||| | ||| || || ||||||||| ||||| | Sbjct 2922 CGGTCGCTCACAAACTCAATGTACTGGCTCATCAGCTTGCCGTTCATGCCGATGAGATCC 2863 Query 48020 ACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGC 48079 || |||| || | || |||||||||||| || | |||||| || ||||| | ||| Sbjct 2862 ACCGGCAGGGCATCGCAGACAAACTCCTTCTCGATTTCCACGGCCTCGCCCACGAGCTGG 2803 Query 48080 TTAA--CGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 || | ||| || ||| | | ||| | | || ||| ||||||| |||||||| Sbjct 2802 TTCAGACGCTCGATGGCGAGCG---GGTGCTC--GAGCATGGAGTAGAGCAGGCAGGCAA 2748 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| |||||| ||| || || || ||||||| ||||||| ||| ||| || |||| Sbjct 2747 AGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCCGGGCA 2688 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| || | || |||| |||| | || | ||| ||| |||||| ||||||| Sbjct 2687 TGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGAAGAAAATGCCCT 2628 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC-GTTCTTGTCTGAGATCCAG 48316 |||| ||| ||||| || | ||||| | |||| | | | | ||||||| Sbjct 2627 CCACGCACGCAAACGCCACCAG--GCGCTCCGCA--AAGCTCTCCGAGCCGTTGATCCAG 2572 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 || |||||||| ||||||||||| | || | |||||| |||| |||||||| Sbjct 2571 CGCAGAGCCCAGTCGGCCTTCTTCTTCACCACGGGTACCGTCTCGGTGGCACGGAAGAG 2513 Score = 96.9 bits (106), Expect = 6e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||||||||| | ||||| || || |||||||||||||| ||||| | |||||| Sbjct 2343 GTACATCTCAGAGTGGATGTTCTCGATGGCAATCTGGAACCCGTAAAAGGCACGGGCCTC 2284 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 || ||| ||| | || | | | ||| ||||| ||| || ||||| || Sbjct 2283 GGGAACGGTCACCTCTTTCATAAAACGCACGCCCAGGTTCTCCAGGACGATGCCATCGGA 2224 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 |||||||||| || |||| || | ||| |||||||||||| |||| | Sbjct 2223 GCCAGCAAAGAAAGCGAGGATGTGGGAGATGAAGTGGCGCTCGTTGCCATTGAGCTTCTC 2164 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTC 48639 |||| |||| | ||| | ||||| ||||| || || Sbjct 2163 CCAGTCCTGCATGTCGCTACCCAGATCCACCTCCTC 2128 >seq2314 Length=1923 Score = 107 bits (118), Expect = 4e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| |||||||||||| |||||| ||| |||||||| |||||| ||||||| Sbjct 1671 TAGAGCAGGCAGGCAAAGTCGGTGTGCAGGCCCTCGTCCCGAGAAATGAGCTCGTTGGAA 1730 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||||| || | || |||||||||| | || || ||| | ||| Sbjct 1731 AAGGTGAGCCCCGGCATGAGGCCGCGCTTTTTGAGCCAGTAGATGGCGCAGAAGGCGCCG 1790 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||| |||||||||||| ||| ||||| Sbjct 1791 CTGAAGTGGATGCCCTCCACGCACGCAAACGC 1822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931466824189440