Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq114 306 7e-78
seq60 154 3e-32
seq2314 107 4e-18
>seq114
Length=7431
Score = 306 bits (338), Expect = 7e-78
Identities = 1026/1587 (65%), Gaps = 90/1587 (6%)
Strand=Plus/Plus
Query 212705 CTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGA 212764
||| |||||||| ||| | | | | | ||| ||||||||||| | | | | |||
Sbjct 21 CTGGCTCTGGTCGATGTAGGCGCCGCGGTCGGCGGCCATGTCGACCAGCACGCGCTGCTT 80
Query 212765 GAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTG 212824
|| ||||||||| |||||| | | | ||||||||||| || | | || || |
Sbjct 81 GATCTCCCACACCGTCTTGTACAGGCCCTTGAGGTCCTCGGGCACGTCGAGGGC---CGC 137
Query 212825 CACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATG---TCCTCGTTCCAGAGGCCCCT 212881
||| ||||| | ||| || || | || | | || || ||| |||||| |||
Sbjct 138 CACCGACCCGCCGTG---GGCCACCAGCTCGTTCTTGAGGTCGGCGTCCCAGAGCCCCAG 194
Query 212882 GGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCT 212941
| | ||| | | |||||| ||||||| | ||| || || |||||||| |
Sbjct 195 GCGCGTGAGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAACTCGCCCGAGAGCACGCG 254
Query 212942 CCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGC 213001
| | ||| | ||| ||||||||||||| || ||||||||| |||| |||||
Sbjct 255 GCGCACGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGCT 314
Query 213002 AGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGAT 213061
||||| || ||||||||||| |||||||| || ||| | || |||||||||| |
Sbjct 315 GGTGCTCGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCAGCCCGTGCTCGCGCAC 374
Query 213062 GAGGCGC-CGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCC 213120
| | ||| || || | |||||||||| | || | || | | ||||| ||
Sbjct 375 G-GTCGCGCGCAGGGCCTCCCAGTCCCACCGCCC------GCTCTGGGGCGTCACGCCCC 427
Query 213121 ACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGC 213180
||| ||| ||||| |||| | | | | || || ||| | ||| || |
Sbjct 428 ACAGGTCGTGCTGCAGCTTGCCCTGGGACGCCGGAGACCCGGCGTAGGTCTCGTACGGCC 487
Query 213181 CAT-GCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAAT 213239
| | || | ||| |||||||| || | |||| || |||||||||| ||| || ||
Sbjct 488 CGTCGCGGCG-GGCGAGCTCGCACGAGGTGCGCAGCGCGGCGTAGTAGACGGTCTCGAAG 546
Query 213240 ATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAA-GGGCATCATCATGCGTTGGAA 213298
|| || | |||||||| | |||||| ||| ||| || |||||| || | |||
Sbjct 547 ATGTCGCGGTTGAGCTGCGCGGCCTC-GGGCCCGTCAAAGGGCATGCCCAGCAGGATGAA 605
Query 213299 CACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGA 213358
| || ||||| ||||| || || | ||||||||| | ||| | ||||| ||
Sbjct 606 GGCGTCGGCCAGGCCCTGCACGCCCAGGCCGATGGGGCGGTGCCGGAGGTTG--CT---- 659
Query 213359 GCACTCCTCC------AAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGT 213412
|| ||| || | |||||| |||| ||||||||| ||| |||||||| ||
Sbjct 660 GCGCTCGGCCGCGGGGACGGGGTAGTGGTTGACGTCGATGATGCGGTTCAGGTTGCGCGT 719
Query 213413 GGCCACTTTGGTGACATGGGCCAG---GT---ACTCGT------GATTGAACACGT---- 213456
||||| ||| | ||||| || | ||| | || | |||
Sbjct 720 CGCCACCGACACGACCTCCGCCAGCCGGTCAAAGTCGAAGCGGCGCGTGGCCGCGTCCAA 779
Query 213457 --AGCCC---------------------------CCGTCCTGCACAAACTCAGGCAGGGC 213487
||||| ||||||| || || ||||| ||
Sbjct 780 GGAGCCCACGAGCTTGCGGCCCTCGCGGCCCTGGCCGTCCTTGACGAAGCGCGGCAGCGC 839
Query 213488 GATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGT 213547
||| ||| |||||||| |||||| ||| | | | | |||||||| | |||||||||
Sbjct 840 GATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCGGT 899
Query 213548 GCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA 213607
||||||||||||||| ||| |||||||||||||| ||||| ||| |||||| |
Sbjct 900 GCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAGGC 959
Query 213608 ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCA 213667
|||||||| ||||||||||| | || ||||| ||| | | ||| || | |||
Sbjct 960 GTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAACCA 1019
Query 213668 GAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGT 213726
|| | | || | || | | || || | || | | || ||||||| | |||
Sbjct 1020 CAGCTGCTGCGC---GCGCATCGTCTTGCGCGCGC-GGCCCTCGCGCTCGTACCGCGCGT 1075
Query 213727 AGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA--CAGGATGCGGGACA 213784
||||| | || ||| ||||||| || |||| ||||| | | || || ||
Sbjct 1076 AGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGG--CA 1133
Query 213785 CATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAG 213844
| |||||||| | |||||| | ||| | || ||| |||||||| |||| ||||||
Sbjct 1134 GAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAG 1193
Query 213845 CGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAG 213904
| || ||||||||| | || | ||| ||| || ||| |||||||| || ||
Sbjct 1194 CCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAG 1253
Query 213905 AAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT 213964
|||| | | |||||||||||| ||||||| ||| | |||||||||||| | |||
Sbjct 1254 CCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTT 1313
Query 213965 ---GCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAG 214021
||||||||||||||| || ||| |||||| | |||||| | ||| ||||
Sbjct 1314 GCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCAC 1373
Query 214022 CCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCAT 214081
|||||| | |||||||| ||| || ||||| || | ||| | | || | |||
Sbjct 1374 GCCGTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTCGTGCAT 1433
Query 214082 GGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCAT 214141
| ||||| ||||| || ||| |||| ||| ||||| | | | || ||
Sbjct 1434 GTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTGTCGTA 1493
Query 214142 GATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCT 214201
|||||| | |||||||| | | | | || ||| |||||||| ||||| || |
Sbjct 1494 GATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCGGGCG 1553
Query 214202 GGACGAGCCAGAGTTGAAAAGCGTGGG 214228
|| | ||| | |||||| ||||| ||
Sbjct 1554 GGGGGTGCCCGCGTTGAAGAGCGTCGG 1580
>seq60
Length=8765
Score = 154 bits (170), Expect = 3e-32
Identities = 361/539 (67%), Gaps = 12/539 (2%)
Strand=Plus/Minus
Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899
|||||||| || || | ||||| || ||||| ||||| |||| || ||||||| ||||
Sbjct 3042 TGGTAGTCTCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCC 2983
Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959
|| || ||| || |||| | ||| || | | | | |||| | |||||
Sbjct 2982 ATCCAGTCGAACGGATTGGTGGCGTTGTAGAGCTTGGGCGCACCCAGGGCGACGAGCAGC 2923
Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGAC 48019
| || || |||| ||||| | ||| || || ||||||||| ||||| |
Sbjct 2922 CGGTCGCTCACAAACTCAATGTACTGGCTCATCAGCTTGCCGTTCATGCCGATGAGATCC 2863
Query 48020 ACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGC 48079
|| |||| || | || |||||||||||| || | |||||| || ||||| | |||
Sbjct 2862 ACCGGCAGGGCATCGCAGACAAACTCCTTCTCGATTTCCACGGCCTCGCCCACGAGCTGG 2803
Query 48080 TTAA--CGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137
|| | ||| || ||| | | ||| | | || ||| ||||||| ||||||||
Sbjct 2802 TTCAGACGCTCGATGGCGAGCG---GGTGCTC--GAGCATGGAGTAGAGCAGGCAGGCAA 2748
Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197
|||| |||||| ||| || || || ||||||| ||||||| ||| ||| || ||||
Sbjct 2747 AGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCCGGGCA 2688
Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257
||| || | || |||| |||| | || | ||| ||| |||||| |||||||
Sbjct 2687 TGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGAAGAAAATGCCCT 2628
Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC-GTTCTTGTCTGAGATCCAG 48316
|||| ||| ||||| || | ||||| | |||| | | | | |||||||
Sbjct 2627 CCACGCACGCAAACGCCACCAG--GCGCTCCGCA--AAGCTCTCCGAGCCGTTGATCCAG 2572
Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375
|| |||||||| ||||||||||| | || | |||||| |||| ||||||||
Sbjct 2571 CGCAGAGCCCAGTCGGCCTTCTTCTTCACCACGGGTACCGTCTCGGTGGCACGGAAGAG 2513
Score = 96.9 bits (106), Expect = 6e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483
||||||||||||||| | ||||| || || |||||||||||||| ||||| | ||||||
Sbjct 2343 GTACATCTCAGAGTGGATGTTCTCGATGGCAATCTGGAACCCGTAAAAGGCACGGGCCTC 2284
Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543
|| ||| ||| | || | | | ||| ||||| ||| || ||||| ||
Sbjct 2283 GGGAACGGTCACCTCTTTCATAAAACGCACGCCCAGGTTCTCCAGGACGATGCCATCGGA 2224
Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603
|||||||||| || |||| || | ||| |||||||||||| |||| |
Sbjct 2223 GCCAGCAAAGAAAGCGAGGATGTGGGAGATGAAGTGGCGCTCGTTGCCATTGAGCTTCTC 2164
Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTC 48639
|||| |||| | ||| | ||||| ||||| || ||
Sbjct 2163 CCAGTCCTGCATGTCGCTACCCAGATCCACCTCCTC 2128
>seq2314
Length=1923
Score = 107 bits (118), Expect = 4e-18
Identities = 115/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181
||||||| |||||||||||| |||||| ||| |||||||| |||||| |||||||
Sbjct 1671 TAGAGCAGGCAGGCAAAGTCGGTGTGCAGGCCCTCGTCCCGAGAAATGAGCTCGTTGGAA 1730
Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241
||| ||| || ||||||| || | || |||||||||| | || || ||| | |||
Sbjct 1731 AAGGTGAGCCCCGGCATGAGGCCGCGCTTTTTGAGCCAGTAGATGGCGCAGAAGGCGCCG 1790
Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273
|||| |||||||||||| ||| |||||
Sbjct 1791 CTGAAGTGGATGCCCTCCACGCACGCAAACGC 1822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931466824189440
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